XLOC_000834 (si:ch211-15j1.5)


Basic Information

Item Value
gene id XLOC_000834
gene name si:ch211-15j1.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58116900 ~ 58132014 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001330
aaatcatctctaataactgatttattttatctttgtcatgatgacagtaaataatattagactagatattcttcaagacacttctatacagcttaaagtgacatttaaaggcttcactagggtaattaggttatctaggcaggttagggtaattaggcaagttattgtataatgatggtttgttctgtagactatagggaaaaaaaatatagtttaaagggctAATATTGTCCTTAGaatgcttattaaaaaaaaattaaaaactgcttttattctagccgaaataaattaaataagacttactgcagaagaaaaaatattatcagacatactgtgaacattgaATCTgctgaacatcatttgggaaatataaaaaaaagaaaattcaaaggggggcgaataattctcactatatatatatatttgtgtgttgttGAACCTGTGATGATGTTCTGCACCACTAGAGGCAGCACAGGCTAGGTTTCATTTTGCATATCCTGTTAGAAATATAAATAAGGCACACCTTACACCAGGTAGAACTGAAAGTGAAAAGATCGCAGCATATGTACGCATGTATCCTCAATTAACCTGAACGTACATACATTTTGTGTAAATGAAAGAAGGTGaacattaaaatgagtaaaaGGAAGAGAGAAGATGAGGATGCTGCCTCTGAAATAAGTTCTGCATCTCCCGGATCAAGCTGTGTGTCTGTGAAGAGTGATCAGtccatgaaaaaaaatcttcctgACTTCAGCGATGCATcagtgacctctgacctcagCATTAGCAAGACAATAAATCAAAGATCAGCGTCTCCAGAGTTCAGCGTTCTGTCAATGACGAGTAACAGATCCATCGGGCAACCTGAAAACTTCAGTGATGAACCAGTGACATTTGACTCAGTGCTGAGTGATGCATTGGACAAACCAGATTATGAGAAATTACACCGAATTAAAgaccagcacaaaaccagcatgaaaaacaaatatgagagattatttgagggacTCAAACTAGATGAGACTGGAACCCACCTGAACCGGATCTACACCCAGCTGTACATCCTAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACACTCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcgctggaatcggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACGCTCAGAAAGTTTGTGATGTGACTGAgacttcatcagtggctgtgttgatgtcaAAGCTGATGAAAGGAgagctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctccaaatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgaGCAGCATcgagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcatccactgtgcttcagaagctcctggaagaagatctgagtgcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgattcagatcaacatgaggaatcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagaaGTGATtgtcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcgtAGACGTCTCTGACgcctcagtgtattctgggatttgcactgagatctttaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctgaGCGTTCAGGAGTTCCTCGCTGCTTTCCATGTGTTTTACTACCATGTGAACACAACTATGGATGGACTGAGGAATTTTGCCTCAGTAGAAAACctgattaaaggtgcagtagataAAGCCATTGAGAGTGAgaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctactgacacacacagagaagagctcagagagcatcaggagaagcacacagtacattaaagagaAGATCAGAGATGGACATGGACTCTCcactgaaagatccatcaatctgttcctctgtctgctggaagtgaaagatcagactctgttcagagagattcaggagtttgtgaaatcagacaaacagtcagagaagaaactctctcctgctcactgctcaacaatcgcCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGGAGCTCCAGAAATACAACACATCAGATGAGGGCAGGAGAAGACTGATACCAGCCGTCAGCAACTGCACAAGAGCTCTGTGAGTGTCGAATCCAGTGTTACAGTGAAGAAACTTTTCTGAATGGAAATTCTTTCGTATAAATAGATCTTGTGTTTATTTTTggtaaaattttattttcatttgttctcCTCTTCTTCCAGTCTTGCTGGCTGTAATCTCTCTGCTCAGGATTGTGGAATTGTGTCGTCAGTTcttcaatcctcaaactgtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtcAGCTGGAGATACTGAGGTAATAAGAACATGTGAAGGAAAATGTACAGTCAGGTGGACATAATGTTGATCTTTAGATAATCAAACTGTCATCTAGAGATACTGCGGCATGTTAGAATTGATATTTGATACAACTTATTTTTTGATCAGTACTTTGTATTTTTAAGTTTGGATATTTAACGGCAAACATATTT
>TCONS_00001331
TTTTCAGTAAATGAAAGAAGGTGaacattaaaatgagtaaaaGGAAGAGAGAAGATGAGGATGCTGCCTCTGAAATAAGTTCTGCATCTCCCGGATCAAGCTGTGTGTCTGTGAAGAGTGATCAGtccatgaaaaaaaatcttcctgACTTCAGCGATGCATcagtgacctctgacctcagCATTAGCAAGACAATAAATCAAAGATCAGCGTCTCCAGAGTTCAGCGTTCTGTCAATGACGAGTAACAGATCCATCGGGCAACCTGAAAACTTCAGTGATGAACCAGTGACATTTGACTCAGTGCTGAGTGATGCATTGGACAAACCAGATTATGAGAAATTACACCGAATTAAAgaccagcacaaaaccagcatgaaaaacaaatatgagagattatttgagggacTCAAACTAGATGAGACTGGAACCCACCTGAACCGGATCTACACCCAGCTGTACATCCTAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACACTCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcgctggaatcggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACGCTCAGAAAGTTTGTGATGTGACTGAgacttcatcagtggctgtgttgatgtcaAAGCTGATGAAAGGAgagctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctccaaatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgaGCAGCATcgagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcatccactgtgcttcagaagctcctggaagaagatctgagtgcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgattcagatcaacatgaggaatcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagaaGTGATtgtcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcgtAGACGTCTCTGACgcctcagtgtattctgggatttgcactgagatctttaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctgaGCGTTCAGGAGTTCCTCGCTGCTTTCCATGTGTTTTACTACCATGTGAACACAACTATGGATGGACTGAGGAATTTTGCCTCAGTAGAAAACctgattaaaggtgcagtagataAAGCCATTGAGAGTGAgaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctactgacacacacagagaagagctcagagagcatcaggagaagcacacagtacattaaagagaAGATCAGAGATGGACATGGACTCTCcactgaaagatccatcaatctgttcctctgtctgctggaagtgaaagatcagactctgttcagagagattcaggagtttgtgaaatcagacaaacagtcagagaagaaactctctcctgctcactgctcaacaatcgcCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGGAGCTCCAGAAATACAACACATCAGATGAGGGCAGGAGAAGACTGATACCAGCCGTCAGCAACTGCACAAGAGCTCTTCTTGCTGGCTGTAATCTCTCTGCTCAGGATTGTGGAATTGTGTCGTCAGTTcttcaatcctcaaactgtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtcAGCTGGAGATACTGAGgttgtctggctgtatggtgacagaggaaggctgtggttttctatcttcagctctgagttcaaacccctcacacctgagagagctgaatctgagctacaatcacccAGGACAATCAGGAGTCCAGCTGCTCCAACACACACTGGAGGATCCACACTACACACGGCAGAAACTCAATTGGGATCATGGAGGCCATTTCAGAATCACACCAGGACTGAGAAAATatgcatGTTTTCTGacactggatccaaacacagcacacaatCAACTCATCCTGTCTGAGGATAAAAGAAAGGTGACACATGTCAAAGACCCTCAGCAATATACTGATTATCCTGAGAAATTTGTGCACCAAGAGCAGGTTCTGTGTAAAGAGACTCTgactggacgctgttactgggaggttGAATGGAGTGGTGAGGGCACTGATATAGCCGTGGCCTATAAAGGAATTCGGAGGAAAGCAGGAAGTGACTGTTGGTTTGGATACAGTGAAAAGTCCTGGAGTCTCTTCTACACTGGCAATGGGTTCAATGTCTGGCACAATAATAAGAGCCAAATCATACCAGCCCCTTCACCTCTGTCTAATAGAGTAGGAGTGTATCTGGACACTGAGTCTGGCTCTCTGTCCTTCTACAGtgtctctgacacacacacactcacacacttacacacattcaACACCACATTCACTGAACCCCTCTATGCTGGATTCAGAGTGTTTGATTCCTCACTGTCTTTGTGCAACATTTAGAAGCCTGATGTGAGAAATATCTGAGATGTCACAAACATATGTCTTCAATCTCCAGCTGTTTTGTAGGGTAAAGTATGTTAAAGTAGTATAGACCAAATCAGTGTAGTAATGTGAATATATTTGAGAGTACTTGAGGAAGAAGAAACAATGAAAGAAGGTCATTGTTGTCAGGAGTGCTCCTGTCCTTATTGCAGGGTTACCTTCTCCTAGGCTGTGTTTGAAATTCAATAATATCACACTACTCACTATTTCATAGTATGCACATTTCTGCATGCATGGAATATGCGGATGACCAACAATATTTGCCAGTATCTGCTAAATGTAATTCAAATTAGTACTGTATTTGAATTGCATACTGCTAACCAACTTGTACTATATTGACAGATGTCTGGATACCTTTTCTATTAGTTTCTTAATGTATAATGTCAATGTTGGTAACCTGTTACAACAAACTCTGAGTAGACTATaatcttatataaatatatatgtgtgtgtgtgtgtgtttgtgttgtgtttaaaaaaaaatttctccaATAAACAGAACTTGAGGaaa

Function

symbol description
si:ch211-15j1.5 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-11 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

Ensembl:

ensembl_id ENSDARG00000091912

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001330 False 3163 mRNA 0.41 3 58116900 58123102
TCONS_00001331 True 3567 mRNA 0.44 6 58119117 58132014

Neighbor

gene id symbol gene type direction distance location
XLOC_000833 si:ch211-114l13.1 coding upstream 13918 58091659 ~ 58102982 (+)
XLOC_000832 si:ch211-114l13.13 coding upstream 27951 58079053 ~ 58088949 (+)
XLOC_000831 si:ch211-114l13.4 coding upstream 40184 58066109 ~ 58076716 (+)
XLOC_000830 trim35-1 coding upstream 67385 58039551 ~ 58049515 (+)
XLOC_000829 BX469930.2 coding upstream 99536 58003615 ~ 58017364 (+)
XLOC_000835 si:ch211-15j1.4 coding downstream 5006 58137020 ~ 58145365 (+)
XLOC_000836 si:ch211-15j1.3 coding downstream 17986 58150000 ~ 58155977 (+)
XLOC_000837 BX927298.1 coding downstream 28137 58160151 ~ 58173589 (+)
XLOC_000838 si:ch211-15j1.7 coding downstream 44009 58176023 ~ 58179756 (+)
XLOC_000839 si:ch211-15j1.1 coding downstream 50386 58182400 ~ 58187215 (+)
XLOC_000826 NA non-coding upstream 185308 57926893 ~ 57931592 (+)
XLOC_000822 NA non-coding upstream 374464 57742079 ~ 57742436 (+)
XLOC_000819 NA non-coding upstream 404664 57710298 ~ 57712236 (+)
XLOC_000818 NA non-coding upstream 551664 57541116 ~ 57565236 (+)
XLOC_000864 NA non-coding downstream 445905 58577919 ~ 58585132 (+)
XLOC_000865 NA non-coding downstream 454339 58586353 ~ 58595767 (+)
XLOC_000871 NA non-coding downstream 514671 58646685 ~ 58669075 (+)
XLOC_000874 NA non-coding downstream 646039 58778053 ~ 58782292 (+)

Expression


Co-expression Network