RNA id: TCONS_00001330


Basic Information

Item Value
RNA id TCONS_00001330
length 3163
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_000834
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58116900 ~ 58132014 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaatcatctctaataactgatttattttatctttgtcatgatgacagtaaataatattagactagatattcttcaagacacttctatacagcttaaagtgacatttaaaggcttcactagggtaattaggttatctaggcaggttagggtaattaggcaagttattgtataatgatggtttgttctgtagactatagggaaaaaaaatatagtttaaagggctAATATTGTCCTTAGaatgcttattaaaaaaaaattaaaaactgcttttattctagccgaaataaattaaataagacttactgcagaagaaaaaatattatcagacatactgtgaacattgaATCTgctgaacatcatttgggaaatataaaaaaaagaaaattcaaaggggggcgaataattctcactatatatatatatttgtgtgttgttGAACCTGTGATGATGTTCTGCACCACTAGAGGCAGCACAGGCTAGGTTTCATTTTGCATATCCTGTTAGAAATATAAATAAGGCACACCTTACACCAGGTAGAACTGAAAGTGAAAAGATCGCAGCATATGTACGCATGTATCCTCAATTAACCTGAACGTACATACATTTTGTGTAAATGAAAGAAGGTGaacattaaaatgagtaaaaGGAAGAGAGAAGATGAGGATGCTGCCTCTGAAATAAGTTCTGCATCTCCCGGATCAAGCTGTGTGTCTGTGAAGAGTGATCAGtccatgaaaaaaaatcttcctgACTTCAGCGATGCATcagtgacctctgacctcagCATTAGCAAGACAATAAATCAAAGATCAGCGTCTCCAGAGTTCAGCGTTCTGTCAATGACGAGTAACAGATCCATCGGGCAACCTGAAAACTTCAGTGATGAACCAGTGACATTTGACTCAGTGCTGAGTGATGCATTGGACAAACCAGATTATGAGAAATTACACCGAATTAAAgaccagcacaaaaccagcatgaaaaacaaatatgagagattatttgagggacTCAAACTAGATGAGACTGGAACCCACCTGAACCGGATCTACACCCAGCTGTACATCCTAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACACTCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcgctggaatcggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACGCTCAGAAAGTTTGTGATGTGACTGAgacttcatcagtggctgtgttgatgtcaAAGCTGATGAAAGGAgagctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctccaaatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgaGCAGCATcgagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcatccactgtgcttcagaagctcctggaagaagatctgagtgcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgattcagatcaacatgaggaatcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagaaGTGATtgtcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcgtAGACGTCTCTGACgcctcagtgtattctgggatttgcactgagatctttaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctgaGCGTTCAGGAGTTCCTCGCTGCTTTCCATGTGTTTTACTACCATGTGAACACAACTATGGATGGACTGAGGAATTTTGCCTCAGTAGAAAACctgattaaaggtgcagtagataAAGCCATTGAGAGTGAgaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctactgacacacacagagaagagctcagagagcatcaggagaagcacacagtacattaaagagaAGATCAGAGATGGACATGGACTCTCcactgaaagatccatcaatctgttcctctgtctgctggaagtgaaagatcagactctgttcagagagattcaggagtttgtgaaatcagacaaacagtcagagaagaaactctctcctgctcactgctcaacaatcgcCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGGAGCTCCAGAAATACAACACATCAGATGAGGGCAGGAGAAGACTGATACCAGCCGTCAGCAACTGCACAAGAGCTCTGTGAGTGTCGAATCCAGTGTTACAGTGAAGAAACTTTTCTGAATGGAAATTCTTTCGTATAAATAGATCTTGTGTTTATTTTTggtaaaattttattttcatttgttctcCTCTTCTTCCAGTCTTGCTGGCTGTAATCTCTCTGCTCAGGATTGTGGAATTGTGTCGTCAGTTcttcaatcctcaaactgtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagtccaaactgtcAGCTGGAGATACTGAGGTAATAAGAACATGTGAAGGAAAATGTACAGTCAGGTGGACATAATGTTGATCTTTAGATAATCAAACTGTCATCTAGAGATACTGCGGCATGTTAGAATTGATATTTGATACAACTTATTTTTTGATCAGTACTTTGTATTTTTAAGTTTGGATATTTAACGGCAAACATATTT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-11 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

Ensembl:

ensembl_id ENSDART00000160436

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001323 lncRNA upstream 99536 58003615 ~ 58017364 (+) True XLOC_000829
TCONS_00001322 lncRNA upstream 132012 57983974 ~ 57984888 (+) True XLOC_000828
TCONS_00001318 lncRNA upstream 185308 57927489 ~ 57931592 (+) False XLOC_000826
TCONS_00003265 lncRNA downstream 403289 58526391 ~ 58530485 (+) True XLOC_000862
TCONS_00003266 lncRNA downstream 454817 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00003267 lncRNA downstream 463251 58586353 ~ 58588475 (+) False XLOC_000865
TCONS_00003268 lncRNA downstream 465118 58588220 ~ 58595767 (+) True XLOC_000865
TCONS_00003269 lncRNA downstream 523583 58646685 ~ 58669075 (+) True XLOC_000871
TCONS_00001328 mRNA upstream 13918 58091659 ~ 58102982 (+) False XLOC_000833
TCONS_00001329 mRNA upstream 18482 58094551 ~ 58098418 (+) True XLOC_000833
TCONS_00001327 mRNA upstream 27951 58079053 ~ 58088949 (+) True XLOC_000832
TCONS_00001325 mRNA upstream 40184 58066109 ~ 58076716 (+) False XLOC_000831
TCONS_00001326 mRNA upstream 46822 58067815 ~ 58070078 (+) True XLOC_000831
TCONS_00001332 mRNA downstream 13918 58137020 ~ 58141637 (+) False XLOC_000835
TCONS_00001333 mRNA downstream 16000 58139102 ~ 58145365 (+) True XLOC_000835
TCONS_00001334 mRNA downstream 26898 58150000 ~ 58155977 (+) True XLOC_000836
TCONS_00001336 mRNA downstream 52921 58176023 ~ 58179756 (+) True XLOC_000838
TCONS_00001337 mRNA downstream 59298 58182400 ~ 58187215 (+) True XLOC_000839
TCONS_00001304 other upstream 761867 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 2819649 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 2988321 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 3930744 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 4055690 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001335 other downstream 37049 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 1008190 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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