G312943


Basic Information

Item Value
gene id G312943
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 140698 ~ 143074 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU355795
CGGTCAGACCGAAGTAATCAATACACGGTCCCGAAAGTGGGTACTTCTCATTTCTTATTTGTGCATCCTCGTTTCCTTTCCTCGCGTATCATCTCAACCCCCCATAGGATGTGAGGAGAGGTCAGAAAACGAGGACAGAGGAATCGAAGGAAATACTCCATTTGTATATTGGAATGTTCTTGATCACTCGAGCGTCACTTCAAAGCGTCATCAGATGCGCTCGAGGGATCTGCCCTCATTTTAAAGTTTGGTTAATTAAAAAAAAATCATAATAAATATTAATAACGCAAGGTGCCTCGTTAAAATATGTGAGATGTAATGTTTATTTAAATTATTGTGACAGATGTGAAGGGGGGGGGGAACATACATCAGGGGTGCTTCTCAATTCTTATTTGTGCATCCTCGTTTCCTTTCCTAGCTTCCTTTTCGAGTATGAGGTCTCTGTGGAACAAAAGTGGGCGTTTCTTGTGGGTGTTTATATATCATGCAATGAAGATGATCCCCTTCACCTGACCCCACCCCTAAACCCTATCCACACTCTGACGTGGGCAAATCAACGCTCTCAAAAACGCCCCTCTGTTTATGGCCTCGCCCATCAATCATTAATGTTCTGCAGAGACCTAGGGCACGTTCAAGCTCAAACTGGTGCGCAACGTTTTGCTATGGTTATACTCACAATAAAAATAATAATGTCATATAGATCATAACACAGTCTCGGAGGTAAGAAGTGGATTATCCTTCACCTGAAATGTTTGTCTTTTCATCCTGAAATATGAGGCAATTTGGATCACAATAATTAGAAGTTTCCACAAATTCCTTCACTTGATTGTGGTGTTCTCTTTTTTATCTGGACAGCAGTGACTGTAACATCGAGCGTATTTTGCAGTTTTAAACACGTATTTATACCGATTTCATCAGGCTCCGAAAATTCTTCAAAAAGAACACAAAGAATGGCCTTCTCAGCTGCCATAGTTGCAACTCATGCGTCATCAGAACAGGGTGTTCAACGCACCACCATGTCCGTTTAAAAAACGTTTTGCAAAACGTTTTCCTCGCGTCTCAGCTCCACCCCCCGTTGGATGTGAGTGAAGAATGCAAGAAAAGAAAACGAGGACAGAGGAATCAAAGGAAATGTTATTTGTATTTTATTTTTATTTATTTAATTTTTTTTTTCTTGGACAGATAAGCTTTTTTTATTGCAGAGAACGGGAAGACAGACGAATAAGCATATAGCACATAAACAAAAATAAAAAAGGAGACAAAGCAATAATTAAAAAAATAAAGAGAATAAAATAAAAATAAGAGGGCCATCATCTAACATATATAGACTATGAAGAGATCAAAGGCAGAGCAAATCCTAACAGTCACTTTCTTATTAGATACTGAAATACATAATTTTCCATTTCTTTTAAGAAGACAGGTAAACAGTTGGAAAATTTGCATTTGTGAATGTAAAATATGCTTAGGAAAAAAATTAAATTGATAACAAAACATATTTCCGTTTGTGGGGTCTGAGTCATAATACCCAAATTATAATGTCTCATTTATTTGGTACTTAAACTCTGGAACAATTTTCCTAGCATTGTTCGGGAAGCAGACACACTCTGTCAGTTTAAATCTAGACTAAAAACGCATCTCTTTAACCTGGCATACACATAACACCAGATGTAATCATTACATCAGAAGAAGAATGGCATCTACGCTAATATTAGTCTCTCTGTTTATCCCGAGGTTTACCGTAGTCAGCCGGATCCAGGCCGTATCCAGGTGAGATTGAGGACCTGCGCATTGACACGACCACAACGCAGCCCTGAAGTCCACTGTGAAGGCCTCATCGACATGAAAGCCAGTGGCACAGTTCCTCAACAAACCGTCTGTACCGCCGTGATGAATACGATCTTCAACTGGATGGAACTGGAATAAATACTTCGACTGTTGCGATCACATCAGACTTATGATAGCTGCCTGAATCATAACAAAGCACTGTTCACCAGAGGAGAACTGGCCCCCCGCCTAAGCCTGGTTTCTCCCAAGGTTTTTTTCTCCATTTTTAACACCTGTTTGCCACCTGATGTCACCTGTTGAAGTTTGGGTTCTTTGCCGCTGTCGCCTTTGGCTTGCTTAGTTGGGGACACTTGACATTTGATATTCAACAGTATTTTGATCTGCCTGCATTGACACCATTGTATGCGAACTGAACTGAGCTGGATGATGACATCACTGTTTACTCCAGTACTGAATTTACTTAAGATGGATACTGACACCATTTTCTTTAAGAGCTGCTGTGCAGCCAAAATTATATACCAGTTATCACTGTAAAGCTGCTTTGACACAATCTGCATTGTAAAAAGCGCTATATAAATAAAGGTGACTTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU355795 True 2377 lncRNA 0.40 1 140698 143074

Neighbor

gene id symbol gene type direction distance location
CI01000098_00088670_00090682 KGUA, GUK1A, GUK1 coding upstream 49987 88670 ~ 90711 (+)
CI01000098_00021120_00023861 NA coding upstream 115728 21120 ~ 24970 (+)
CI01000098_00015532_00021007 NA coding upstream 119617 15532 ~ 21081 (+)
CI01000098_00010591_00010959 ARF1 coding upstream 128760 10591 ~ 11938 (+)
CI01000098_00000571_00001804 NA coding upstream 138805 571 ~ 1893 (+)
CI01000098_00152510_00154925 NA coding downstream 9144 152218 ~ 155306 (+)
CI01000098_00176829_00219542 NA coding downstream 33755 176829 ~ 219542 (+)
CI01000098_00274963_00275658 NA coding downstream 131657 274731 ~ 275712 (+)
CI01000098_00301943_00303337 NA coding downstream 158869 301943 ~ 303544 (+)
CI01000098_00438241_00447948 USP14 coding downstream 295167 438241 ~ 448016 (+)
G312962 NA non-coding upstream 92366 48052 ~ 48332 (+)
G312957 NA non-coding upstream 101818 38638 ~ 38880 (+)
G312955 NA non-coding upstream 107340 33152 ~ 33358 (+)
G312952 NA non-coding upstream 111651 28762 ~ 29047 (+)
G312989 NA non-coding downstream 25828 168902 ~ 169423 (+)
G312991 NA non-coding downstream 28466 171540 ~ 171832 (+)
G313003 NA non-coding downstream 84059 227133 ~ 227340 (+)
G313005 NA non-coding downstream 85479 228553 ~ 228893 (+)
G313006 NA non-coding downstream 87274 230348 ~ 230576 (+)
G313412 NA other downstream 721555 864629 ~ 865947 (+)
G314121 NA other downstream 1612066 1755140 ~ 1760972 (+)
G314278 NA other downstream 2086250 2229324 ~ 2234831 (+)
CI01000098_02167217_02267829 NA other downstream 2105042 2167217 ~ 2267829 (+)

Expression


Co-expression Network