G313008


Basic Information

Item Value
gene id G313008
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 231133 ~ 232371 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU355862
TATGTTCATATTTTCTGGTTCTGCTCAGAATCCTGGCAGCAGCGTTCGGTACGAGCTGTAGCTGTCTGATGGTCTTTTTGGGAAGGCCAATGAGGAGTCCATTACAATAATCCACCCTTCTGGTGATGAAAGCATGAACAAGTTTCTCTAAGTCTTGACTGGTGACAAAGCATTTAATTCTTGCAATATTTTTGAAATGATAATATGCTGATTTAGTTATTGCCTTTACATGACTACTGAAAATCAGGTCTGACTCTAAAATCACACCAAGATTCCTGACTTGATTTTTAGTTGTTTGACCCCTAGAGTGAAGGTATGCGTTCACTTTGAGAACTTCATCTTCGTTTCCAAACGCAATGACTTCAGTTTTGTCTTTGTTTAACTGAAGGAAGTTTTGGCACATCCAATTTTTTATTTCATCAATGCATTGGCACAGGGAGTCAATGGGGCTGTAGTCGTTAGGTGATAGGGCTAGGTAAATCTGGGTGTCATCTGCATAGCTGTAATATGCAATTTGGTTCTTTCTCATTATTTGGCTCAGTGGCAGCATATATAGGTTGAACAGGAGTGGTGCAAGTATTGAACCTTGAGGGACTCCGCATGTCATGGATGTCCACTCAGACTTATGGTCACCGATACTCACATAATAACCTCTCCCTTCTAAGTATGACCTGAACCATTTAAGGACCATCCCAGAAAGCTCGACCCAGTTTTCCAGCCTATCAAGAAGTATGTTGTGATCAACAATGTCAAACGCGGCACTGAGGTCGAGCAGTACCAGCACTGATATTTTACCTTTATCGTTGTAAAGCAATGATTAAACCATGAACCAATGACAACCTAACACATCAGAACAAGGGAATTGCATGACAACAGGGAGCACATGGCAAACATGGAAACAAAGCAATGAAAGCAATAAGACATGAACCTAAACTTGAAAATAAAACATGAAGCATGAACATGACACAAGACCACAACAAGACATGACATTATGGCGGTCAAACTTTTTAAATTAATCCGCAAATCACATGCGTGCCGAACCGTGGGTCCTGGTCCATATGGATCATGTATCAACAACGATCAGTTTAACCCCTAGTTGAAGGACATTTCAATTTTAAGGATCCTTGGTAGGCAGGCTTCGTTTCACTTTGTATTTTGAAGAATACATCAAGTGTTAAACCTTCTAGGACTATAGATTCCATGTCCTAAGAAGGAACACAGGCAGAGCGGAAAGTTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU355862 True 1239 lncRNA 0.41 1 231133 232371

Neighbor

gene id symbol gene type direction distance location
CI01000098_00176829_00219542 NA coding upstream 11591 176829 ~ 219542 (+)
CI01000098_00152510_00154925 NA coding upstream 75827 152218 ~ 155306 (+)
CI01000098_00088670_00090682 KGUA, GUK1A, GUK1 coding upstream 140422 88670 ~ 90711 (+)
CI01000098_00021120_00023861 NA coding upstream 206163 21120 ~ 24970 (+)
CI01000098_00015532_00021007 NA coding upstream 210052 15532 ~ 21081 (+)
CI01000098_00274963_00275658 NA coding downstream 42360 274731 ~ 275712 (+)
CI01000098_00301943_00303337 NA coding downstream 69572 301943 ~ 303544 (+)
CI01000098_00438241_00447948 USP14 coding downstream 205870 438241 ~ 448016 (+)
CI01000098_00470832_00473215 NA coding downstream 238058 470429 ~ 473640 (+)
CI01000098_00652733_00677992 PHLPP1 coding downstream 420362 652733 ~ 679210 (+)
G313007 NA non-coding upstream 12 230836 ~ 231121 (+)
G313006 NA non-coding upstream 557 230348 ~ 230576 (+)
G313005 NA non-coding upstream 2240 228553 ~ 228893 (+)
G313003 NA non-coding upstream 3793 227133 ~ 227340 (+)
G312991 NA non-coding upstream 59301 171540 ~ 171832 (+)
G313010 NA non-coding downstream 1861 234232 ~ 234450 (+)
G313011 NA non-coding downstream 2361 234732 ~ 234937 (+)
G313012 NA non-coding downstream 2717 235088 ~ 235309 (+)
G313014 NA non-coding downstream 4067 236438 ~ 236741 (+)
G313016 NA non-coding downstream 7816 240187 ~ 240672 (+)
G313412 NA other downstream 632258 864629 ~ 865947 (+)
G314121 NA other downstream 1522769 1755140 ~ 1760972 (+)
G314278 NA other downstream 1996953 2229324 ~ 2234831 (+)
CI01000098_02167217_02267829 NA other downstream 2015745 2167217 ~ 2267829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005820 NA non-coding NC_007124.7 CM002897.2 10151075 ~ 10302070 (+)
tiger barb (Puntius tetrazona) G140785 NA unknown NC_056718.1 CM032087.1 21844146 ~ 21844701 (+)