G313343


Basic Information

Item Value
gene id G313343
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 771859 ~ 773585 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU356234
GGCCTTCTGAAGCAAAGCGATGTGTTTTTGTAAGAAAAATATCCATATTTAAAACTTTTTACTCAAATAACTAGCTTCCGGTGGACCGGTGGAAGAATGCGCAAGTCGACTTGCGCCAAATGAGTAATCCTCTGACGCGATGTATGATGTAGGAGTGTTGTAAGCTTAGACGCCTCTCGCGGTTCAAACAAATAGGGATGTGCAACAAATTTAAGCTCCTCTTTATATCGAAATCCTCCAACATTTCTCTTTAAAAAAATATCGTTTTAGGCTTATAATCCGTGACCGGTGATTTGTGTTGCTCTATCCTCTGCACCTCCGCGTTCATCATTACGCTGTGCGTCAGGTCACAGGATACTCTTCCACTGCAAGTGGACTTGTGCATTCTGCATACTGTCATCTGCCGAAAACTAGTTATTTGAATTTATAAAGTTTTAAATATGGATATTTTTCTTGGAAAAACGCTTCGCTTCAGAAGGCCTTTATTAACCCCCTGGAGTCGTATGGATTACTTTTTTTAATGGATGGATGCATTATTTTTGGCTTCAAAATGCAGCCCCCCATTCACAAGTATTATAAACCTTGGAGGACTAAGGATATTTTTAAATATACCTCCGATTCTGTTTGTCTGAAAGAAGATAGTCATATACACCAAGGATGAGGGTGACTGATTCACAGGATAATTTTCATTTTTGAGTGAACTATCCCTTTAAGAAAGATAAAATCACTGCACTCTACTGACTCAGGGTGCGTCGATCCAAGAAAATTGCAGTGTTTTTTCTTGACAATAACTTCAGTTATTGGATATGATTACTAAAATATAATTTAACCAATGAAAATATAATTTAACCAAATCCAGGAAAAAACTAAAATGGGAAAAATGGAATTTGGGATAACATAAAATGGAATTTGAGAGAACCATACAGCTGATTTTATAGGGCCCTATTATTGTTAAAAAAAAAAAAAAAAATTCAATTAATTTGATGTTTTTTTTTTATTTTTATTTTTATTAAAATTAAAGCAGAATCCAGATAAACAAAAAGCAGAAAACACAAATTCTGGGAAAAATAAAACTGAATTCTGGAAAAAACAAAAGGGATTTCATAGGCCCCTAAAATGTATTTTTGTTAGCCTTTTAATAAATTGTTGTTACAGGTTTTATGCCTTCAATTAAATAGACATGATTACTAAAATTGAATTTAACCATTTAAAAGAAAATCCAGAATTTTTGTATTTTTTTAAAATAAAATGGAAGTTGTGAAAAAATACATGTACATCTGTTAACTTGAATTTTGGGAAAACAGAATTTGAGGTGAAAAATGGATTTCCTAGGGCCCTAAAATGTATTTTTGTTGACCTTTTAAAAGATTTAAGTTTTATGACTTAAGTTAATTAGACACAATTGCTAAAATGTAATTTAACCATTAAAAAGAAAATCCAGAAAAATTAAAATAATAATTTGTGAAAAAATATAACTAAATTTGAGAAAAATTACAACTGATTTCACAGGGCTCTAGGTTTCTGTTTCTCTTTCAGTAGAGCGATTTCATGTACTTTTTCTTCTTTCCCTCTTTCTTATGAAGTGTACAATATTCTTATTCTCAATTTCATGTTTATGATGTTTACCTAAAAATAGGTAATGTTTCACTGTGACATGTTTTGCACACTACTCGTTTGACGCATATCACCTGCTGTCACAGCTGTGTGTGGAACAGGCCTCATGTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU356234 True 1727 lncRNA 0.32 1 771859 773585

Neighbor

gene id symbol gene type direction distance location
CI01000098_00652733_00677992 PHLPP1 coding upstream 92649 652733 ~ 679210 (+)
CI01000098_00470832_00473215 NA coding upstream 298219 470429 ~ 473640 (+)
CI01000098_00438241_00447948 USP14 coding upstream 323843 438241 ~ 448016 (+)
CI01000098_00301943_00303337 NA coding upstream 468315 301943 ~ 303544 (+)
CI01000098_00274963_00275658 NA coding upstream 496147 274731 ~ 275712 (+)
CI01000098_00791105_00826150 MOV10L1 coding downstream 17520 791105 ~ 826164 (+)
CI01000098_00894309_00897316 NA coding downstream 120724 894309 ~ 897387 (+)
CI01000098_00899135_00921462 NA coding downstream 125492 899077 ~ 921724 (+)
CI01000098_00987638_00993102 NA coding downstream 214053 987638 ~ 993102 (+)
CI01000098_00996891_01000102 NA coding downstream 223306 996891 ~ 1000275 (+)
G313348 NA non-coding upstream 27927 740587 ~ 743932 (+)
G313371 NA non-coding upstream 35519 735718 ~ 736340 (+)
G313353 NA non-coding upstream 45186 725591 ~ 726673 (+)
G313354 NA non-coding upstream 88219 682739 ~ 683640 (+)
G313358 NA non-coding upstream 161913 609625 ~ 609946 (+)
G313376 NA non-coding downstream 5720 779305 ~ 779578 (+)
G313396 NA non-coding downstream 67371 840956 ~ 842170 (+)
G313401 NA non-coding downstream 73743 847328 ~ 847563 (+)
G313418 NA non-coding downstream 104347 877932 ~ 878228 (+)
G313419 NA non-coding downstream 104774 878359 ~ 878987 (+)
G313412 NA other downstream 91044 864629 ~ 865947 (+)
G314121 NA other downstream 981555 1755140 ~ 1760972 (+)
G314278 NA other downstream 1455739 2229324 ~ 2234831 (+)
CI01000098_02167217_02267829 NA other downstream 1474531 2167217 ~ 2267829 (+)
G314652 NA other downstream 2427935 3201520 ~ 3204360 (+)

Expression


Co-expression Network