G314276


Basic Information

Item Value
gene id G314276
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000098
NCBI id null
chromosome length 3223972
location 2479702 ~ 2480936 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU357317
GGTTATTTGATCTGAACAGTATAATTGTGGCTTTGCTCACCTCCAAGCTCTTTCAACAGGCCTTCACAGCTACCAGCTGAAATTCCTGCACCCAGATACACTTTAATGTTGACTCCAACTTTAAGCCCAAACTGCACACATTTCTTGGTTTCTTCAAGTGTGTATCCTATAATGAAACAAAATACCCTCGCATTCAGTGTAGGCTCAACTTTTGGAATAACAGGGTAGTCCCTGTTTTGATCACATCCTATTTTTTCCCTTACTTTTACCTACCAGCTTTTTCAAGTCGCTCATCATTGAGGACAATGGTATATTCAAAATCTCCACCGAGAGTTGCCTCTTTGATAAAATGTGTCCCATAGTCACTGTAGAGCTGCCGGTATTCTCCATACGTGTATTCCGGTGGCAGGGCGTGCAAGCGGGACAGGAATTCAGGGTGTAACATCAGGTTTGATGTCTTTAAAGCATAGCGTGCTACTTCAAGCTCAGAGTGTGCTCGGATAAATTTTTTTTTCCGTCCCTGAAAAGCTGCGCATCTTCTTCACTGACTTCTTGTACTTATGGTTATTGTAATTAAAACTGAATTCAAAAACATCAGGAATAGCAATTCCAAATGAGACGCTGGTCTTGGATAAAGTTGCCTTGCTTTCACTCATGAAGTATTCATTGTAAGACTCGTATGCCTCCATCGTGAAATCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU357317 True 700 lncRNA 0.41 2 2479702 2480936

Neighbor

gene id symbol gene type direction distance location
CI01000098_02447543_02468822 C8A coding upstream 10715 2447543 ~ 2468987 (+)
CI01000098_02304073_02309499 RPE65, RPE65A coding upstream 170129 2303055 ~ 2309573 (+)
CI01000098_02167217_02267829 NA coding upstream 211873 2167217 ~ 2267829 (+)
CI01000098_02037636_02051827 NA coding upstream 427856 2037600 ~ 2051846 (+)
CI01000098_01960410_01996273 HRH3 coding upstream 483304 1960410 ~ 1996398 (+)
CI01000098_02542022_02543246 NA coding downstream 59051 2539987 ~ 2543545 (+)
CI01000098_02695754_02697751 NA coding downstream 213692 2694628 ~ 2699606 (+)
CI01000098_02744193_02749466 NA coding downstream 262989 2743925 ~ 2749520 (+)
CI01000098_02827735_02831191 NA coding downstream 346642 2827578 ~ 2831736 (+)
CI01000098_02847366_02849020 NA coding downstream 365152 2846088 ~ 2849262 (+)
G314282 NA non-coding upstream 8705 2470421 ~ 2470997 (+)
G314277 NA non-coding upstream 62108 2343185 ~ 2417594 (+)
G314351 NA non-coding upstream 147404 2324655 ~ 2332298 (+)
G314347 NA non-coding upstream 168603 2310900 ~ 2311099 (+)
G314311 NA non-coding upstream 261988 2159437 ~ 2217714 (+)
G314404 NA non-coding downstream 9792 2490728 ~ 2490943 (+)
G314405 NA non-coding downstream 10599 2491535 ~ 2491774 (+)
G314406 NA non-coding downstream 18650 2499586 ~ 2501089 (+)
G314442 NA non-coding downstream 67098 2548034 ~ 2548257 (+)
G314278 NA other upstream 244871 2229324 ~ 2234831 (+)
G314121 NA other upstream 718730 1755140 ~ 1760972 (+)
G313412 NA other upstream 1613755 864629 ~ 865947 (+)
CI01000098_00274963_00275658 NA other upstream 2204445 274731 ~ 275712 (+)
G314652 NA other downstream 720584 3201520 ~ 3204360 (+)

Expression


Co-expression Network