XLOC_011081 (ago1)


Basic Information

Item Value
gene id XLOC_011081
gene name ago1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 51084472 ~ 51151993 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021606
AGAAGAAGAAGACGAAGACGAAGAAGAAACGGGCGCTCGCTCGGTCTGAGGGGGGGTGACGGACGGGTCGAGCGTTTTGTTCCGCTGGTGAATCCTGCTTGAACGGAAAGCAGGAGACACAACAACCCGACACACAGAAGCCAGACCAGCCACTGACGAAAGTGCACGGAGGAGCGGGTCTATATAAATAGGAACTACGGAGCTTTTGTTTCTCTCTCAACTCCTGCGGGTTTGGGGGCTCCAGCGGCGGCGGCGGAGAAGATCCCGCTCGCCTAGGGAAGGAGGCTGGAAGTCGGGGACGCTTCCAGCCTGCAGGGCCAGGCGCCGTGGCGATTGAGTATCTGGACTTTGGTGAACCCTTAGGGGCTCAGTGGATGGGATGGAGGCGGGACCATCTGGCGCTGtgcCCGTCGGGCCGTACCCTCCGCCCCTGCAGCAGGTGTTTCAGGCGCCCCGCAGGCCCGGCATGGGCACCGTCGGCAAACCCATCAAACTGCTGGCGAACTACTTCGAGGTGGAGATCCCCAAAATGGACGTGTTTCACTATGAGGTGGACATCAAGCCTGATAAGTGCCCTCGACGGGTCAACAGGGAGGTTGTTGAATATATGGTCCAGCATTTCAAGCCGCAGCTCTTCGGTGACCGAAAGCCAGTGTATGATGGGAAGAAGAATATCTACACTGTTTTAGCGTTACCTATAGGCAGTGAAAAGGTTGATTTTGAGGTGACCATTCCTGGCGAGGGGAAGGATCGAATCTTTAAGGTGTCGATCCGCTGGTTGGCGAAGGTGTCCTGGAGGCTCCTGCAGGAGACGCTGGTCAGTGGGCGACTGCAGGTCCCGCTGGAGTCCGTTCAGGCTCTCGACGTGGCCATGAGACACTTGGCCTCCATGAGGTACACTCCAGTGGGCCGCTCCTTCTTCTCGCCTCCTGAAGGTTACTACCATCCTCTAGGTGGCGGCAGAGAGGTGTGGTTCGGCTTCCATCAGTCCGTTCGACCCGCCATGTGGAAGATGATGCTCAACATTGATGTATCTGCAACAGCCTTTTATAAAGCTCAGCCTGTCATTGAGTTCATGTGTGAAGTCCTGGACATCCGTAACATTGATGAGCAGCCCAAGACACTAACTGACTCGCAGAGGGTCCGGTTCACCAAGGAGATCAAAGGCCTGAAGGTGGAGGTTACGCACTGTGGTCAAATGAAAAGGAAGTACCGGGTCTGTAACGTCACACGGCGTCCTGCTAGTCACCAAACGTTTCCTCTACAGCTGGAGAGCGGACAGACGGTAGAATGCACAGTAGCTCAATATTTCAAGCAGAAGTACAACCTGCAGCTCAAGTACCCTCACCTGCCCTGTCTACAGGTGGGACAGGAGCAGAAACACACATACCTGCCTCTGGAGGTTTGCAATATTGTAGCAGGGCAGCGGTGCATCAAGAAACTGACAGATAATCAGACGTCCACCATGATCAAAGCCACGGCGCGCTCCGCACCAGACCGACAGGAGGAGATCAGCAGACTGATGAAGAACGCTAACTTTAATCTGGATCCTTACATTCAAGAGTTTGGGATTAAGGTGAAGGACGACATGACGGAGGTGACCGGCAGAGTCCTTCCAGCCCCAATCCTGCAGTATGGCGGTCGGAATCGTGCCATCGCGACTCCAAACCAGGGTGTGTGGGACATGAGGGGAAAACAGTTCTATAATGGCATCGAGATCAAGGTTTGGGCCATTGCTTGCTTCGCTCCGCAGAAACAGTGTCGGGAAGAGGTGCTCAAGAACTTCACCGACCAGCTGCGCAAGATCTCAAAGGATGCTGGGATGCCGATTCAGGGTCAGCCGTGTTTCTGTAAGTACGCTCAGGGGGCCGACAGCGTGGAGCCCATGTTCAGACACCTGAAGAACACTTACTCTGGACTGCAGCTCATCATTGTCATCCTGCCTGGGAAAACCCCCGTCTACGCGGAAGTGAAGCGTGTTGGAGACACTCTTCTAGGAATGGCCACTCAGTGTGTGCAGGTGAAGAACGTGGTAAAAACCTCCCCGCAGACGCTCTCCAACCTCTGCCTCAAAATCAACGTCAAACTCGGCGGCATCAACAACATCCTCGTGCCGCATCAACGGTCAGCAGTGTTTCAGCAGCCCGTGATCTTCCTCGGGGCAGATGTTACACACCCGCCGGCTGGTGATGGGAAGAAGCCATCTATTACTGCTgttgtTGGCAGTATGGACGCTCATCCCAGCAGATACTGCGCTACAGTTCGAGTCCAGCGGCCCAGACAGGAGATTATTGAAGATCTGTCCTACATGGTGAGAGAATTACTGATCCAGTTCTACAAGTCCACCCGCTTCAAGCCCACGAGAATCATCTTCTACAGGGACGGCGTACCAGAAGGACAGCTGCCACAAATCCTGCACTATGAGCTGTTGGCCATCAGAGATGCCTGCATTAAGCTGGAGAAAGACTATCAGCCCGGCATCACTTACATAGTCGTGCAGAAACGCCACCATACACGACTCTTCTGCGCCGATAAATCTGAACGAATCGGCAAGAGCGGGAACATACCAGCGGGAACTACGGTCGACACCAGCATCACACATCCATTCGAGTTTGACTTCTACCTGTGCAGTCATGCAGGCATTCAGGGCACCAGCCGACCCTCACACTACTACGTCCTGTGGGACGACAATCGCTTTACGGCTGACGAGCTGCAGATTCTCACCTACCAGCTGTGCCACACGTATGTGCGCTGCACCCGCTCCGTCTCCATCCCCGCGCCAGCATACTACGCCAGACTCGTGGCTTTCCGGGCCCGATACCATCTGGTGGACAAAGAACATGACAGCGGGGAGGGAAGTCACGTCTCCGGGCAGAGCAATGGTCGAGATCCTCAAGCGTTGGCCAAAGCGGTGCAGATTCACCACGACTCCCTGAGGACCATGTATTTTGCCTGAATAACAAAAAGCGCACGTCTCCGGACACCTCGAGCCAGAACCCCTGGGTGCTAAACCAGTCCAATGAAGC

Function

symbol description
ago1 Predicted to enable RNA binding activity. Predicted to act upstream of or within gene silencing by RNA and regulation of translation. Predicted to be located in P-body. Is expressed in several structures, including eye; fin; integument; pleuroperitoneal region; and post-vent region. Orthologous to human AGO1 (argonaute RISC component 1).

GO:

id name namespace
GO:0031047 gene silencing by RNA biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110606-3 Predicted to enable RNA binding activity. Predicted to act upstream of or within gene silencing by RNA and regulation of translation. Predicted to be located in P-body. Is expressed in several structures, including eye; fin; integument; pleuroperitoneal region; and post-vent region. Orthologous to human AGO1 (argonaute RISC component 1).

Ensembl:

ensembl_id ENSDARG00000092644

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021606 True 3026 mRNA 0.55 19 51084472 51151993

Neighbor

gene id symbol gene type direction distance location
XLOC_011080 NA coding downstream 4042 51078667 ~ 51080430 (-)
XLOC_011079 ago3a coding downstream 12066 51001957 ~ 51072406 (-)
XLOC_011078 FP243388.1 coding downstream 123110 50961246 ~ 50961362 (-)
XLOC_011076 si:dkeyp-97a10.3 coding downstream 132206 50926455 ~ 50952266 (-)
XLOC_011077 FP243388.2 coding downstream 149166 50935190 ~ 50935306 (-)
XLOC_011082 serpinb14 coding upstream 92304 51244297 ~ 51254694 (-)
XLOC_011083 serpinb1l1 coding upstream 114509 51266502 ~ 51272006 (-)
XLOC_011084 zgc:173729 coding upstream 129966 51281959 ~ 51288178 (-)
XLOC_011085 serpinb1l4 coding upstream 140631 51292624 ~ 51299061 (-)
XLOC_011086 si:ch211-107n13.1 coding upstream 218113 51370106 ~ 51407525 (-)
XLOC_010626 CR392024.2 misc downstream 30189297 20895112 ~ 20895175 (-)
XLOC_011073 LO018246.1 non-coding downstream 445686 50638670 ~ 50638786 (-)
XLOC_011068 CR855313.1 non-coding downstream 1088878 49995478 ~ 49995594 (-)
XLOC_011087 CABZ01074290.1 non-coding upstream 603399 51755392 ~ 51755506 (-)
XLOC_011088 NA non-coding upstream 723378 51875371 ~ 51889734 (-)
XLOC_011089 NA non-coding upstream 745763 51897756 ~ 51947869 (-)
XLOC_011091 NA non-coding upstream 1374859 52526852 ~ 52540136 (-)
XLOC_011093 NA non-coding upstream 1532765 52684758 ~ 52688445 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location