XLOC_011080


Basic Information

Item Value
gene id XLOC_011080
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 51078667 ~ 51080430 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022272
atatgcacaccttttgttttattttaataatttttttaacaattacgTTATTATATGCCTTGATATGTgtgtaaattgtcatttttgggtgaactattcattttaaaaagcgcTTCTTCCACTGATTTGACACTGAAGCAATACAACATCACCAAAAGCAGAGAAAACCCCACAGCACATTTACCATGCAAAGAACGAACTCGATGCATTCGTACCAATACAGTGAATGATGCAGGAAACCATGTTTGTATATAGTGATCCAGTACTGGCTGTTgggtcaccacacacacacacacacacacacacacacacacacacacacacacactcgcactcgCATAGTGTCAGTAACACTGCCACATTCCCTTCCCAACAAGCACATTTAACACTCGCCAGTGTCATTGCACCTTTAACCCTCACCTGATGAGCATGTAAAGGCCTTTTTTCCGCAGGTCAGAGGATCATTATGTCATGTCATCATGCCATAAGGTGGATTTATGAAATGCATGTTTAAACTGAGTTAGTGTTGTAACTGGAGCCTCTTAGTAATCATGTTAAGACTGAGCCCGCACTAATATTTGATGCCATACTTTCTTACCTTTTGTGCAGGAATAGTGgggccaaaactgaaaatttgctCATTTTCCCATTCGCATGAATGTTATTGCTGATTTGAATGCTGACATTTTTTCCCACAGTTTATTGGGAGGATTAACCACAGCAGAATTTTCATTATTGGctgaactttccattttaagGGACAGTTTGCCGAAAAATGAAAAAGCTCCTCACAATTTACTCATGCTCAAAAAGCTCTCAACTTTTATGAGTGTCtgtcatctgttgaacacaaaacaagatattctcaagagtgctgtaaaaaaacattgatatccatagtaggaagaaaaaaatattatgaaaatgttttttcaacattcttcagaatatcctcCTTTATTGTAAAAAGCGATTACCTGACTAAAGTAGATAAACATGTTGTTTTAaaagtagatttaaaaaataatagatttgttgattttacttaaagtgagtaaatccaattcttttaaagcgattagttgacgtTACTTAAAGTGAATAATCCGGTTTCGttttaagcgattagttgacttaaaaaagttttgttgctcaaactaatttattttaaattgattcATTTACTTTTCTTTTAGAAAGTGACTAAATTCActTTTCAACTCATTTCTTTAAGCAATTGATTGACTTTTCTTTTGTAAAGTaagtttgttgttttaaaattgattagttgactttaaaaattgtttaaactcatttctttaagcgattagttgacttttctttTAGAAAGTGAGTAAATTCATTGTTT
>TCONS_00022273
atatgcacaccttttgttttattttaataatttttttaacaattacgTTATTATATGCCTTGATATGTgtgtaaattgtcatttttgggtgaactattcattttaaaaagcgcTTCTTCCACTGATTTGACACTGAAGCAATACAACATCACCAAAAGCAGAGAAAACCCCACAGCACATTTACCATGCAAAGAACGAACTCGATGCATTCGTACCAATACAGTGAATGATGCAGGAAACCATGTTTGTATATAGTGATCCAGTACTGGCTGTTgggtcaccacacacacacacacacacacacacacacacacacacacacacacactcgcactcgCATAGTGTCAGTAACACTGCCACATTCCCTTCCCAACAAGCACATTTAACACTCGCCAGTGTCATTGCACCTTTAACCCTCACCTGATGAGCATGTAAAGGCCTTTTTTCCGCAGGTCAGAGGATCATTATGTCATGTCATCATGCCATAAGGTGGATTTATGAAATGCATGTTTAAACTGAGTTAGTGTTGTAACTGGAGCCTCTTAGTAATCATGTTAAGACTGAGCCCGCACTAATATTTGATGCCATACTTTCTTACCTTTTGTGCAGGAATAGTGgggccaaaactgaaaatttgctCATTTTCCCATTCGCATGAATGTTATTGCTGATTTGAATGCTGACATTTTTTCCCACAGTTTATTGGGAGGATTAACCACAGCAGAATTTTCATTATTGGctgaactttccattttaagGGACAGTTTGCCGAAAAATGAAAAAGCTCCTCACAATTTACTCATGCTCAAAAAGCTCTCAACTTTTATGAGTGTCtgtcatctgttgaacacaaaacaagatattctcaagagtgctgtaaaaaaacattgatatccatagtaggaagaaaaaaatattatgaaaatgttttttcaacattcttcagaatatcctcCTTTATTGTAAAAAGCGATTACCTGACTAAAGTAGATAAACATGTTGTTTTAaaagtagatttaaaaaataatagatttgttgattttacttaaagtgagtaaatccaattcttttaaagcgattagttgacgtTACTTAAAGTGAATAATCCGGTTTCGttttaagcgattagttgacttaaaaaagttttgttgctcaaactaatttattttaaattgattcATTTACTTTTCTTTTAGAAAGTGACTAAATTCActtttaaactcATTTctttaagcgattagttgactttttattAGAAAGTGAGTGAATTCATTGTTTTAAAAGCGATTTGTTGACTTTTCTTTTGGAAAGTGAGTGAattcattgtttttaaagcaataagTTGACTTGAAAATGAATTTAAACTCATTTCTTTAAGCGATTAATTGACTTTTCT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0002065 columnar/cuboidal epithelial cell differentiation biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042668 auditory receptor cell fate determination biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0005112 Notch binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022272 False 1369 lncRNA 0.34 2 51078667 51080430
TCONS_00022273 True 1396 lncRNA 0.34 2 51078915 51080430

Neighbor

gene id symbol gene type direction distance location
XLOC_011079 ago3a coding downstream 6261 51001957 ~ 51072406 (-)
XLOC_011078 FP243388.1 coding downstream 117305 50961246 ~ 50961362 (-)
XLOC_011076 si:dkeyp-97a10.3 coding downstream 126401 50926455 ~ 50952266 (-)
XLOC_011077 FP243388.2 coding downstream 143361 50935190 ~ 50935306 (-)
XLOC_011075 CU855821.1 coding downstream 159759 50917913 ~ 50918908 (-)
XLOC_011081 ago1 coding upstream 4042 51084472 ~ 51151993 (-)
XLOC_011082 serpinb14 coding upstream 163867 51244297 ~ 51254694 (-)
XLOC_011083 serpinb1l1 coding upstream 186072 51266502 ~ 51272006 (-)
XLOC_011084 zgc:173729 coding upstream 201529 51281959 ~ 51288178 (-)
XLOC_011085 serpinb1l4 coding upstream 212194 51292624 ~ 51299061 (-)
XLOC_010626 CR392024.2 misc downstream 30183492 20895112 ~ 20895175 (-)
XLOC_011073 LO018246.1 non-coding downstream 439881 50638670 ~ 50638786 (-)
XLOC_011068 CR855313.1 non-coding downstream 1083073 49995478 ~ 49995594 (-)
XLOC_011064 NA non-coding downstream 1841566 49236408 ~ 49237101 (-)
XLOC_011087 CABZ01074290.1 non-coding upstream 674962 51755392 ~ 51755506 (-)
XLOC_011088 NA non-coding upstream 794941 51875371 ~ 51889734 (-)
XLOC_011089 NA non-coding upstream 817326 51897756 ~ 51947869 (-)
XLOC_011091 NA non-coding upstream 1446422 52526852 ~ 52540136 (-)
XLOC_011093 NA non-coding upstream 1604328 52684758 ~ 52688445 (-)

Expression


Co-expression Network