XLOC_011099 (si:ch211-269k10.4)


Basic Information

Item Value
gene id XLOC_011099
gene name si:ch211-269k10.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 53247831 ~ 53259409 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021631
cacacactcatcattTCTCCTCTATAACGCGGAAGACAAACTCCATCGGTGATGGCCAGTGCAGATATATCGATGGATATTCAGAGGCATTCAGACACAGCGGGTGATCAAAATCCGCTAATCAAATATTATCGTGCCAGTGAAGTTATGCCTGCTCCAGTGCCAGCGCTCAACACACTGCTCAGAAAAGGCCCTGCAACCTGCGctGCCATTCAGGCGTCCAGTGGGATTCTGAGTTTGGGAATCGGAGTCGTGTTTGCAGCTTCATGGGACATCGGGTTCAATTTACTGACTTTATTCAGAATTCCCATCGTCACTGGAGTAATGTTTGTGGTGGCTGGAATCCTGTCAAATCTTCTGTACAAACACCCAGAGCTTCTGCACACCTGCTTCATTGCAAACATCCtatgtctgtgtgtttctgcGATCGGTGCAATTCTTCTGATAGTTGATCTTCAACCAGGAGGAAATCAAATCCAGCAGAAGATGGAGGTTCTGATTCTGTGTGTGACTCTGATGGACATAATCATCGCCGGTGTGCTAATTTTCTGGTTCTACCGTGAGAAACGTGGCCCCAAAAAGTGACTCAGTGGTTTCTGCTCTCGTACGCTTCAACAAAAATAACAGAAGTCAAGAACTCCAGAAAGCAGAAGCTACTTCAGATGCAGTTCACACATCAAGCATTTCTCAGACTCTTAGCAGCCAGACGAGAGATGTGGAGGATTTGGCTCGGAAATGTGACTAAATACCAGTGAACATGCATGTTATGTGATATGTTTCAGCATGATTGAAAATTAAGTGCTGCTTTGACCCTTGCAACCgctttatttgtttgcatttcaGCATTT
>TCONS_00021632
gGTGATGGCCAGTGCAGATATATCGATGGATATTCAGAGGCATTCAGACACAGCGGGTGATCAAAATCCGCTAATCAAATATTATCGTGCCAGTGAAGTTATGCCTGCTCCAGTGCCAGCGCTCAACACACTGCTCAGAAAAGGCCCTGCAACCTGCGctGCCATTCAGGCGTCCAGTGGGATTCTGAGTTTGGGAATCGGAGTCGTGTTTGCAGCTTCATGGGACATCGGGTTCAATTTACTGACTTTATTCAGAATTCCCATCGTCACTGGAGTAATGTTTGTGGTGGCTGGAATCCTGTCAAATCTTCTGTACAAACACCCAGAGCTTCTGCACGTCAGTGTCTGCATTTACACATGTGTATTTCCTATAAATATACAGCATCCAGAAAAATATTCTTCATTTTTTCCCCAGACCTGCTTCATTGCAAACATCCtatgtctgtgtgtttctgcGATCGGTGCAATTCTTCTGATAGTTGATCTTCAACCAGGAGGAAATCAAATCCAGCAGAAGATGGAGGTTCTGATTCTGTGTGTGACTCTGATGGACATAATCATCGCCGGTGTGCTAATTTTCTGGTTCTACCGTGAGAAACGTGGCCCCAAAAAGTGACTCAGTGGTTTCTGCTCTCGTACGCTTCAACAAAAATAACAGAAGTCAAGAACTCCAGAAAGCAGAAGCTACTTCAGATGCAGTTCACACATCAAGCATTTCTCAGACTCTTAGCAGCCAGACGAGAGATGTGGAGGATTTGGCTCGGAAATGT

Function

symbol description
si:ch211-269k10.4 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-414 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000097847

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021631 False 848 mRNA 0.45 6 53247831 53259409
TCONS_00021632 True 770 lncRNA 0.45 4 53247940 53254782

Neighbor

gene id symbol gene type direction distance location
XLOC_011098 brd9 coding downstream 280966 52926139 ~ 52966865 (-)
XLOC_011097 zdhhc11 coding downstream 331583 52901490 ~ 52916248 (-)
XLOC_011096 TPPP coding downstream 368090 52875093 ~ 52879741 (-)
XLOC_011095 spire1b coding downstream 426808 52786644 ~ 52821023 (-)
XLOC_011094 azin1a coding downstream 511282 52706059 ~ 52736549 (-)
XLOC_011100 NA coding upstream 215049 53474458 ~ 53481394 (-)
XLOC_011101 CR759845.1 coding upstream 326298 53585707 ~ 53637122 (-)
XLOC_011102 NA coding upstream 380837 53640246 ~ 53649995 (-)
XLOC_011103 NA coding upstream 391493 53650902 ~ 53655539 (-)
XLOC_011104 NA coding upstream 426905 53686314 ~ 53699443 (-)
XLOC_010626 CR392024.2 misc downstream 32352656 20895112 ~ 20895175 (-)
XLOC_011093 NA non-coding downstream 559386 52684758 ~ 52688445 (-)
XLOC_011091 NA non-coding downstream 707695 52526852 ~ 52540136 (-)
XLOC_011089 NA non-coding downstream 1299962 51897756 ~ 51947869 (-)
XLOC_011088 NA non-coding downstream 1358097 51875371 ~ 51889734 (-)
XLOC_011087 CABZ01074290.1 non-coding downstream 1492325 51755392 ~ 51755506 (-)

Expression


Co-expression Network