XLOC_000111


Basic Information

Item Value
gene id XLOC_000111
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9129386 ~ 9132490 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003032
ATACTTATTTGCCCAACtgtatattttacttttaatggTAAACATCCACAACTACTACTCTTTAAATTAACACTGAAATGCAGTTAGCAAATAAATTCACCTGTGCAAATGTCCAGGAATGTGAAAGACTCCACGTCTGATCTCCCTTCCTTTGAGCCCAAAGACAAACACTCCATTGTCCAGCCACACATATGCAGCAGTCCTCTGATGGCCATCGCACCAAACACAAATCCAACACGCATCCATCTTCCAGCGCCTGAGTACAAAGATATACATATTAAGCAAATATAATTTTCATTGCAAAtcaatcaaatatttattaaCCTTTACTGACACCTTAAAAGTATGCATCTCCTGCAGGACTGTGGAAAAATGACCTGCATCAGAGAATGGCGTTTGCTCATGAAATAATGTCAGATTGTTGGAAGAAAATTCCTCTGACGGATTCCTTCTTTCTGTACTCTCATTTACAGAAGTCTCCAAAGAGGTCTTATCAAAAGGAGTTTGACTTTGGGTTTCAGACCAAAGCTTAGAGCTTTCACAATTTTGAACAGGATTAATACTCTCCAGTTGGGGATTATTGTGGAGCTGAGCTTCATTTTCTGTTGTGCACTTGGTTTTATTTCCACATTCAAGATTGCTTTCTTCATCAAAACTTCTTTCATGTTCCAGGTGATTTCCTGATATGCATGAGGACTCTCTCTTTGGGGTTTCTGGACTTTTTAAATGTTCATATCCCAATGCAATGTTCCTCTGAGAAGACATATTCAGTTTCACATTATTTTGAGCTTTTGGTATTGACTCTTGAGTCATTTCAGATGGTGTCTGAATCCTAGAGCCTCTCTGAACTTCAGCTCGACCTCCTCGCTTTATAAAGTTACTATTTTTTATGTTCTCTGAAGTATTGGCTGAGACGGATTCTGGAGAAACACAACCCATGAGTGTCACTGAAGAGGGAGACTTAAGGATGCCAGATGATGAAAAGAGAGGTGTCCGGAGATCTAAGGGTGAAGCTGGAGTCAAAAAGTGAGGGGACATTCCTAGAGATGGCAGCACAGGATCTTGACTCTTCTGCGTGTGCGCAGTCAAAGATGGACTCAACTTCAGTACCACAGGAGAAAGTGAGGTTTTCTCTAAGAGTATGTCagattgtttttgtatttgtgattGCAGCCCTTTAATGTTTTCTGCTTCTGAGGATTCAACCTTTCTCTCATTATTCATGCATTCGCCTGGTTCAGTGCAGTTCATCAGACCTGAAGAGCTTTCATTTACAGCATGAGGATCTTTTGGTATCTctgtctgtgattggtcagtgGCATCTGATTGGCAATGTGGTAAACTGTCCTCAAGTGAAGAGATATATATGGGTTCTGGAGTAAACAATTCCCCCACTGAAAAATGTGCATCAGTTTTACACTTTCTCGCTCTCTGGCGCCTGCTGCTCTGCCGTGTTTTGTACGCTAGATGGTGCTGTGGGAAGGGTTCTACGATTGAAGTGGGCAAGCGTAATCTTTCAAGCTTCAGCTGGCCAAAATCCTCATCGGGTAAGTGGAAATCCTGGATATCATCAAGAGTTACTTGTCCActtgttgttttcttttcttgaaGACCCTGGATAAGTGAAGTTAATGATGGCAAAAATGGCGACTGatctaaaatgcaaaataaaaaacaacaacaaataaaaaatcatgtCTGAAACTCAACATTTTAGCCACAAGTAGGAAATAATTCTCACCATATTTATTTGTTCCTTTCTGAGACTCTAATCCAGTTTGTCCAAGCTTTCTCCTGAAAATAGGATACAAATCTGAATCCGGGATGAGTTGGGAGTCAATGTAAAGCTGAGAATCTGGGAGATGCTTTAAATCTTGAGTAGCTCCTTGCTCTGGGTTTAAATTCACTGCAGGCTCATGCAAATCGTTTGACTGAGACTCAACCTGCAGACCTTCAAGAACCAATTCTGATTGCCTGAGTAATTCATCGTGAGATTTGTTAAGAGACTCTGGAGAATCTGCTGTAAGATTGGCACATGATGTGGGTCCTACAGTCGTTCTTCGACGTCCTCTCCTCCCTCTCCGTCCTCTTCCTCTGCCTCTTTGTTGGTCAGTGGTCCTACAGACTGGTTCTGAACGCTCTGGGGTCACCTGACCTCTACTGCTCAATTGGGATTGGCTCAGTCTGCGTCTGCCTCGCCCTCCTGTGAGCTGGCTATAAATGACAGCATCTAGATCGATGGAGCTGTTAGATGCAGCCATGCGTCGTGTCGTCCGAACATAATACTCCACTGGAAATGGTAAACCCTCGACAAGTGTGCATGAGTCTAGAACACCAGATGTAAATGAGGATTGTTTAACATCAATCTTGTCATCATAATCTTTTTTAGTTGATGACTGTTTGGTTTGTTTTAACATCTCTCCTGATTTGTCAGTTGCCTCAGCTGACTGAGAGAAAAATGAGATAGACACTGGTGGACCAAAGTGTAATTCTTCCTTAACAGGCCGATCAGTAAGAGGTAAATCAACCTCTGCCTTGCTACTGTCAGCATTTTGATTTTCTAAATGAATTTCTATACTTGAAACCACTGGCAGTTTGTCATTTGATTGACTCACAGAGCAGTTTAATACACAGTGTTCCTCTTTTTTCCCATCATTCTCCAGAACTTGAGGTGGCTTCACAATTTTACTGTCTGTTTTTACTCGTGATGGCCTATCCTTACACTTCTCCTTCTCAATGTCTCTTTCTTTTATCTTTTCAAAGTCCTTCtcttcatttttaacttttttcagACTGTTCCCTTTACTATTAGGACATTCCCTTAATTCGGCGTTCTCTCTTTCATGGATATTCTCTTGGCTGATGTCAGTGTCTGATTCTCGCTCTTTGTTCTGTAGGCGCAGTCGACTGCGTTTTGAACGGAGCCGGTGAGCAGGGCTTCGCTTGCATGCAGGGGAGTACAAAGACGGTGTAGATGTAATCTCAGCTAGTTGCAATTGGAAGGCAGGGGTTTTCTCAACAGCAGAACAATCTGAGATGTTTCTGTCT

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0000152 nuclear ubiquitin ligase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003032 True 3048 lncRNA 0.42 2 9129386 9132490

Neighbor

gene id symbol gene type direction distance location
XLOC_000110 cacng3a coding upstream 37451 9082417 ~ 9091935 (+)
XLOC_000109 BX004779.3 coding upstream 54907 9071324 ~ 9074479 (+)
XLOC_000108 prkcba coding upstream 64474 9004719 ~ 9064912 (+)
XLOC_000107 tlr2 coding upstream 140882 8984068 ~ 8988504 (+)
XLOC_000106 NA coding upstream 152964 8967479 ~ 8976422 (+)
XLOC_000112 rasd3 coding downstream 12468 9144958 ~ 9145896 (+)
XLOC_000113 plk1 coding downstream 20651 9153141 ~ 9161843 (+)
XLOC_000114 chtf18 coding downstream 66541 9199031 ~ 9227204 (+)
XLOC_000115 chtf18 coding downstream 86158 9218648 ~ 9221616 (+)
XLOC_000116 BX323038.1 coding downstream 145356 9277846 ~ 9285351 (+)
XLOC_000105 NA non-coding upstream 163447 8950874 ~ 8965939 (+)
XLOC_000100 NA non-coding upstream 538750 8587230 ~ 8590636 (+)
XLOC_000098 AL928650.2 non-coding upstream 552112 8575307 ~ 8577274 (+)
XLOC_000097 NA non-coding upstream 554329 8573777 ~ 8575057 (+)
XLOC_000120 NA non-coding downstream 754465 9886955 ~ 9914630 (+)
XLOC_000121 NA non-coding downstream 814174 9946664 ~ 9951873 (+)
XLOC_000133 AL935188.1 non-coding downstream 1231230 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 1329554 10462044 ~ 10462882 (+)

Expression


Co-expression Network