XLOC_000115 (chtf18)


Basic Information

Item Value
gene id XLOC_000115
gene name chtf18
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9218648 ~ 9221616 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000213
GTTTGGTGGAACTGAAGATGGATGGAAACCAGGATTGAGGCGATAAAGGCAGAAACCATTTGTGTCGTTGGATGGGTTTTCAGACGATGAGCTCACACTGGAAGTGAGGAAGAGCATCATCACTTTACATCATAGTCATGCAGCAGTCGTTCCTGCAGGCGCGCTGTGAGGAGACGCTGGTCACCTCTGATTGGGGGATTCCTCTGCTGGTTGCGCTGCTGTTGCTTCTGCTGGTTTATGCTTTCCTATATCTTCCCGCTGTTTCCTATCGAGCTCTACTCCAACAAGCGCTGGACAACCACACTGAAGCCATGACTGTGGATAACGACAAGATGCCCTGAAGATCACAGCTAAATGATGCACGATTATAGAAGCAAAATGCATTTTGATTGCATCATCCAGATATGAGGAGAAATGCCTCAAATGATGCTGTTTTTGTTCCTTAATGTCCTATTTTGAAAGTCAAGACTGTGATGTTCAATCATTTCCAGTACACAGCAAGCTTTTCCATATAAAagtttctgtctctctctccctctctttttttttaacaacaagcAGCATATGAGACATGATGAAGAAGAATTCACTTTGGAAATAAACTTTCATCACTGTCCTGCCCTCTCAAAGGAAGAATAGTATTGACTTTAACATGAAACGGCAGTAATATATGGAAAAAACCCCACACAGAATAATGAACTGCTCCACATTTCTTTGACAGAAAGTTCTCCAGCTGTTGTGG

Function

symbol description
chtf18 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity and single-stranded DNA helicase activity. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; eye; immature eye; optic tectum; and pharyngeal arch. Orthologous to human CHTF18 (chromosome transmission fidelity factor 18).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0017116 single-stranded DNA helicase activity molecular_function
GO:0003689 DNA clamp loader activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-508 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity and single-stranded DNA helicase activity. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; eye; immature eye; optic tectum; and pharyngeal arch. Orthologous to human CHTF18 (chromosome transmission fidelity factor 18).

Ensembl:

ensembl_id ENSDARG00000058480

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000213 True 742 processed_transcript 0.43 2 9218648 9221616

Neighbor

gene id symbol gene type direction distance location
XLOC_000113 plk1 coding upstream 56805 9153141 ~ 9161843 (+)
XLOC_000112 rasd3 coding upstream 72752 9144958 ~ 9145896 (+)
XLOC_000111 NA coding upstream 86158 9129386 ~ 9132490 (+)
XLOC_000110 cacng3a coding upstream 126713 9082417 ~ 9091935 (+)
XLOC_000109 BX004779.3 coding upstream 144169 9071324 ~ 9074479 (+)
XLOC_000116 BX323038.1 coding downstream 56230 9277846 ~ 9285351 (+)
XLOC_000117 uncx4.1 coding downstream 68487 9290103 ~ 9294115 (+)
XLOC_000118 elfn1b coding downstream 335596 9557212 ~ 9712302 (+)
XLOC_000119 pmm2 coding downstream 638765 9860381 ~ 9866856 (+)
XLOC_000120 NA coding downstream 665339 9886955 ~ 9914630 (+)
XLOC_000106 NA non-coding upstream 242226 8967479 ~ 8976422 (+)
XLOC_000105 NA non-coding upstream 252709 8950874 ~ 8965939 (+)
XLOC_000100 NA non-coding upstream 628012 8587230 ~ 8590636 (+)
XLOC_000098 AL928650.2 non-coding upstream 641374 8575307 ~ 8577274 (+)
XLOC_000121 NA non-coding downstream 725048 9946664 ~ 9951873 (+)
XLOC_000133 AL935188.1 non-coding downstream 1142104 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 1240428 10462044 ~ 10462882 (+)

Expression


Co-expression Network