RNA id: TCONS_00000213


Basic Information

Item Value
RNA id TCONS_00000213
length 742
RNA type processed_transcript
GC content 0.43
exon number 2
gene id XLOC_000115
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9218648 ~ 9221616 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGGTGGAACTGAAGATGGATGGAAACCAGGATTGAGGCGATAAAGGCAGAAACCATTTGTGTCGTTGGATGGGTTTTCAGACGATGAGCTCACACTGGAAGTGAGGAAGAGCATCATCACTTTACATCATAGTCATGCAGCAGTCGTTCCTGCAGGCGCGCTGTGAGGAGACGCTGGTCACCTCTGATTGGGGGATTCCTCTGCTGGTTGCGCTGCTGTTGCTTCTGCTGGTTTATGCTTTCCTATATCTTCCCGCTGTTTCCTATCGAGCTCTACTCCAACAAGCGCTGGACAACCACACTGAAGCCATGACTGTGGATAACGACAAGATGCCCTGAAGATCACAGCTAAATGATGCACGATTATAGAAGCAAAATGCATTTTGATTGCATCATCCAGATATGAGGAGAAATGCCTCAAATGATGCTGTTTTTGTTCCTTAATGTCCTATTTTGAAAGTCAAGACTGTGATGTTCAATCATTTCCAGTACACAGCAAGCTTTTCCATATAAAagtttctgtctctctctccctctctttttttttaacaacaagcAGCATATGAGACATGATGAAGAAGAATTCACTTTGGAAATAAACTTTCATCACTGTCCTGCCCTCTCAAAGGAAGAATAGTATTGACTTTAACATGAAACGGCAGTAATATATGGAAAAAACCCCACACAGAATAATGAACTGCTCCACATTTCTTTGACAGAAAGTTCTCCAGCTGTTGTGG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0017116 single-stranded DNA helicase activity molecular_function
GO:0003689 DNA clamp loader activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-508 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity and single-stranded DNA helicase activity. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; eye; immature eye; optic tectum; and pharyngeal arch. Orthologous to human CHTF18 (chromosome transmission fidelity factor 18).

Ensembl:

ensembl_id ENSDART00000143336

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000210 lncRNA upstream 57173 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003033 lncRNA upstream 63127 9154094 ~ 9155521 (+) False XLOC_000113
TCONS_00003032 lncRNA upstream 86158 9129386 ~ 9132490 (+) True XLOC_000111
TCONS_00003031 lncRNA upstream 242226 8967479 ~ 8976422 (+) True XLOC_000106
TCONS_00003029 lncRNA upstream 252709 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00000214 lncRNA downstream 56230 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000220 lncRNA downstream 665339 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00002811 lncRNA downstream 725048 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000233 lncRNA downstream 832792 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00003034 lncRNA downstream 1240428 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00000212 mRNA upstream 12032 9199149 ~ 9206616 (+) True XLOC_000114
TCONS_00000207 mRNA upstream 56805 9153141 ~ 9161843 (+) False XLOC_000113
TCONS_00000206 mRNA upstream 72752 9144958 ~ 9145896 (+) True XLOC_000112
TCONS_00000205 mRNA upstream 126713 9086942 ~ 9091935 (+) True XLOC_000110
TCONS_00000204 mRNA upstream 126989 9082417 ~ 9091659 (+) False XLOC_000110
TCONS_00000215 mRNA downstream 68487 9290103 ~ 9294115 (+) True XLOC_000117
TCONS_00000216 mRNA downstream 335596 9557212 ~ 9712302 (+) False XLOC_000118
TCONS_00000217 mRNA downstream 487185 9708801 ~ 9711245 (+) True XLOC_000118
TCONS_00000218 mRNA downstream 638765 9860381 ~ 9866856 (+) True XLOC_000119
TCONS_00000219 mRNA downstream 665375 9886991 ~ 9914239 (+) True XLOC_000120
TCONS_00000209 other upstream 63127 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000208 other upstream 63375 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000154 other upstream 2154705 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 2430844 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 3033116 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000230 other downstream 830158 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 830168 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other downstream 832403 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000236 other downstream 860862 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000245 other downstream 1096461 10318077 ~ 10323272 (+) False XLOC_000132

Expression Profile

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