RNA id: TCONS_00000215


Basic Information

Item Value
RNA id TCONS_00000215
length 1902
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_000117
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9290103 ~ 9294115 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTAGGAGAGAGCGAATAAGCCCGCACGCCTGCCTCGGTCTCCTTATTCCTAATTCGGGAGCGCAAGGCATGTCAACGCCGCACGTCCCTTCACGGCTGCTGCATGCGTTCTGAGGGAAGAGTTGGAGCTTGTTTTGGCCAGACGAACGCGAGATGCAATGATGGATAGCCGGATCCTCGAGCATCCTCATGCCCAATTTGGAGGCTCTTTGGGAAGCATGGTTGGAATGGGTTTCCCCTACCACCTCGGTCATCATCATGTTTACGATATCTCCGGACACCAGCTACAGTCGGCGGCCGCTGTACCTTTTTCTATAGACGGATTACTTAACGGATCATGCTCGGGGTCTGTTGCAAACTCCAACCCATTGCTTGGATCTGGTTGTGGTGTAAACGGGGATAGTCAATATAAACTGGGCGATGGCGGAGACCCCGACAAGGAAAGCCCTGGTTGTAAAAGGAGGCGAACACGTACAAATTTTACGGGTTGGCAGCTGGAGGAACTAGAGAAAGCCTTCAACGAAAGCCATTATCCGGACGTGTTCATGCGCGAGGCGCTCGCGCTACGTCTAGACCTTGTTGAGTCACGTGTTCAGGTTTGGTTTCAAAACCGGCGAGCCAAATGGCGCAAAAAGGAGAACACGAAAAAAGGGCCCGGTCGACCGGCTCACAACTCTCACCCCACTACCTGCAGCGGCGAGCCAATGGACCCAGAGGAAATAGCACGACGGGAGTTGGAGCGTTTGGAGAAGAAAAAGCGAAAACAGGAACGTAAACTGCTCAAGTCTCAGAACAAGCTCTTAGCCGGTGAGCTCTTCCACACGCCCGGTTCTGACAGCGACAGTGGAGTATCGCAAAGCACCGATAGCGAGTCCACTCCGCACACTGGGCCTCAGCATAGCGCGCACCGGCAGCAGACAGAACATATATGTGAGCAACATGCACGCCACCAAAGAGCCAGTACGGTCAATGAGACAGCGGAGCCCATGGACTCCACACGGAACTCTGGCCTGTGCCCCGCAAACGGCATCACACGCGCCTCCACGCTCCAGAAACTCAACCCATTTAGTGTGGAGAGTTTACTAGCCGACTCGAGTCCCAGGAGAAAAACTATCCTGGATTTTTCTCAGTTACCGCCGCAGCGACCACTGGTCGGTAAAGGCCATTTCCTTCTGTATCCCATTACCCAGCCGCTGGGTTTCATTGTGCCACAGACAGCGATGAAACAGAGTCATGATTCAGGAAACTCGGGTCACCACTGTTCCACGACAGACACCTCAACCTCAAACCAGAAAAATGTCAATCACTTGTGCAGAGACAACACCGGTGCAAGCGACGAGCTGCAGAGAGAAACCAAGAACTCTTCAATCCAGTCTCCAAGCACAAGCTCAGAGAAATGCTTTTCAGAATCTAACTCGCCACAAAAGGAGTCTGAAAATGACTCCGAGTCCACTGTCACAAACTCTAGTCAGAAAGAAAGCATCTCTGCTAACCTGTCTGAATATTCTGACAGGAAAAGCCGCAGTTCTGCTGACACAAATACAGATGGAGAGGATGTAGACATGGACTGAAATATAAATAGGCCAGAAGCAGTGGCGCCAAGTGACTTGTCACAATCCCAAAGCTGATAACGACACGTTTTTTTGTATACAAGACTGTTTGAATTCACTTTTTCTACTTTCCAGAAACGGATATTCTTTATTCAGGTGAACTGTCTGTCTGTTTCGGCTTAAAATGTTTGTTCCAGTTCAGTGGCTCTGCTCACTTGAAGGAGCAGGTTAGCTACACGAGCAGGACACACGAACAAAACATCCTCAAATCGTTGTATAAATGATAAAGTAtcgaaaatatttatatatgtatcattttgataagtaataataaaatattgtgaaaGAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050714-1 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within cell differentiation; nervous system development; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including brain; corpuscles of Stannius; hindbrain neural keel; segmental plate; and shield. Orthologous to human UNCX (UNC homeobox).

Ensembl:

ensembl_id ENSDART00000055009

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000214 lncRNA upstream 4752 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000210 lncRNA upstream 128628 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003033 lncRNA upstream 134582 9154094 ~ 9155521 (+) False XLOC_000113
TCONS_00003032 lncRNA upstream 157613 9129386 ~ 9132490 (+) True XLOC_000111
TCONS_00003031 lncRNA upstream 313681 8967479 ~ 8976422 (+) True XLOC_000106
TCONS_00000220 lncRNA downstream 592840 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00002811 lncRNA downstream 652549 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000233 lncRNA downstream 760293 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00003034 lncRNA downstream 1167929 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00002812 lncRNA downstream 1323409 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00000211 mRNA upstream 62899 9199031 ~ 9227204 (+) False XLOC_000114
TCONS_00000212 mRNA upstream 83487 9199149 ~ 9206616 (+) True XLOC_000114
TCONS_00000207 mRNA upstream 128260 9153141 ~ 9161843 (+) False XLOC_000113
TCONS_00000206 mRNA upstream 144207 9144958 ~ 9145896 (+) True XLOC_000112
TCONS_00000205 mRNA upstream 198168 9086942 ~ 9091935 (+) True XLOC_000110
TCONS_00000216 mRNA downstream 263097 9557212 ~ 9712302 (+) False XLOC_000118
TCONS_00000217 mRNA downstream 414686 9708801 ~ 9711245 (+) True XLOC_000118
TCONS_00000218 mRNA downstream 566266 9860381 ~ 9866856 (+) True XLOC_000119
TCONS_00000219 mRNA downstream 592876 9886991 ~ 9914239 (+) True XLOC_000120
TCONS_00000221 mRNA downstream 660374 9954489 ~ 9964765 (+) False XLOC_000122
TCONS_00000213 other upstream 68487 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000209 other upstream 134582 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000208 other upstream 134830 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000154 other upstream 2226160 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 2502299 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000230 other downstream 757659 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 757669 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other downstream 759904 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000236 other downstream 788363 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000245 other downstream 1023962 10318077 ~ 10323272 (+) False XLOC_000132

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00864011_00867698.mRNA True 3763 mRNA 0.45 3 CI01000300 862740 ~ 868771 (+)