XLOC_000132 (pip4p1b)


Basic Information

Item Value
gene id XLOC_000132
gene name pip4p1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10318077 ~ 10325025 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000245
GTGATTCTCTGACGCTTCCTGGAGCTTTACTTTCACGCAtcacttttttttgctttgcgTGACAACATTCACCGGTGACAAACATCAGCATCAGGATTTAGTTGCAGATTTTGTGCCCGTTTACGGTATGGCTGACGGGGAACGATCACCTTTACTATTGGACGGTCGCGATGGAATGACGGGACTGTCACTGGGAGACGAGCCCTACCGACCGATCAGCAAACCGCAGAATTTCGCAGTGTTCCCGTCGGCTCCTCCAATGCTGGGAGAAGCTCCTCCACCGTACTCCCCGCTGGGCTCTCCGGAGAGCAGCAGCGCTCCTGTCATCAGCTGCAGAGTCTGTCAGTCGCTTATTAGCGTGGAGGGCAAAATCCACCAGCATGTGGTCAAATGTGGCGTCTGCAATGAGGCTACACCTATAAAGAACGCTCCAGCGGGAAAGAAGTATGTGAGGTGTCCGTGTAACTGCCTGCTCATCTGCAAAGTCACCTCACAGAGGATCGCCTGTCCTCGGCCTTACTGggcttattatgcatcctgtcgccatcttgtgaatgAACATCGTCAACCGTgtttgctcaaagacaggctaatgaACGCTGATGCGCTTTCTCtcataaatgataaatattttaaaataggcactatttttataaataaactgcacagttttaatctaaacaactacatttgcgattaaaaagcctcaaaagtacattatgttgtccaacagcagcaatatttgtcaaactgtagagtgtcctctgcttgttgctgtatgtgggcggagtaattcACAAGAATGAAGAGGCTGGTcaagtgctgttactggcagaatatcgcacagctatcagccaatcagattcaagaaccagacagaacagtagaaatatatttatgtttt
>TCONS_00000246
CGCTTCCTGGAGCTTTACTTTCACGCAtcacttttttttgctttgcgTGACAACATTCACCGGTGACAAACATCAGCATCAGGATTTAGTTGCAGATTTTGTGCCCGTTTACGGTATGGCTGACGGGGAACGATCACCTTTACTATTGGACGGTCGCGATGGAATGACGGGACTGTCACTGGGAGACGAGCCCTACCGACCGATCAGCAAACCGCAGAATTTCGCAGTGTTCCCGTCGGCTCCTCCAATGCTGGGAGAAGCTCCTCCACCGTACTCCCCGCTGGGCTCTCCGGAGAGCAGCAGCGCTCCTGTCATCAGCTGCAGAGTCTGTCAGTCGCTTATTAGCGTGGAGGGCAAAATCCACCAGCATGTGGTCAAATGTGGCGTCTGCAATGAGGCTACACCTATAAAGAACGCTCCAGCGGGAAAGAAGTATGTGAGGTGTCCGTGTAACTGCCTGCTCATCTGCAAAGTCACCTCACAGAGGATCGCCTGTCCTCGGCCTTACTGTAAGCGAGTTATCAATTTAGGTCCAGTTAATCCTGGTGCAGGGAGTCCAAATCCTCAGCCTACTGGAGCCAGAGTTTCCTGTGGCCACTGTGCAAAGACCTTCTTGTGGACAGAGTTTACAGATCGGACATTGGCTCGCTGTCCACACTGCAGAAAAGTTTCATCGATAGGCCAGAGGTACCCTCGAAAACGGAGTTTGATATGTTTCCTGTTGTGTTTGATCTTCGTCATAACAACAGCGGGATTGATTGCTGGTACATGGTTGAAAGCACAGAAATATAAGGGCATTTACGCATCCTGGGTATTTTTCATTGTCCTGGTGCTGGTTACTTTAGTCAGAGCTTTACACTGGGCCTGCATGAAAATCAGTGAACCGCTACACAACTACTCATAGGAGAGATTCATCCACGGAGAGCAACAGACAAGAAAATGGAGAACATGTTCATAGTTTGATGCTCTGCCTAAATGGGTGAAAACCTGTGAGGAAAGAGTCAGTAATATTTCACCTCAAAATCAATGCAATACATAGGTTTGATAATGTTTAATGGCCcaaaacctttattaattatacaaaaacaaaaataaataataataataataataataataataataatacttaatattCCCTTTGTTTTAGGGGTGAATTAGATGGGTGCTCATTTCTTCCTTAGAATAAAAGGTTAATAAACGTAATAaacttttta

Function

symbol description
pip4p1b Predicted to enable phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity. Predicted to act upstream of or within phosphatidylinositol dephosphorylation. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human PIP4P1 (phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1).

GO:

id name namespace
GO:0046856 phosphatidylinositol dephosphorylation biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0034597 phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-195 Predicted to enable phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity. Predicted to act upstream of or within phosphatidylinositol dephosphorylation. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human PIP4P1 (phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1).

Ensembl:

ensembl_id ENSDARG00000026387

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000245 False 904 processed_transcript 0.47 4 10318077 10323272
TCONS_00000246 True 1217 mRNA 0.45 7 10318089 10325025

Neighbor

gene id symbol gene type direction distance location
XLOC_000131 zgc:77880 coding upstream 2871 10305611 ~ 10315206 (+)
XLOC_000130 eif3f coding upstream 14033 10297027 ~ 10304044 (+)
XLOC_000129 npy2rl coding upstream 82740 10221568 ~ 10235337 (+)
XLOC_000128 rbm46 coding upstream 180301 10127163 ~ 10137776 (+)
XLOC_000127 si:ch73-132f6.5 coding upstream 193885 10074343 ~ 10124192 (+)
XLOC_000133 AL935188.1 coding downstream 38695 10363720 ~ 10363851 (+)
XLOC_000134 dachb coding downstream 53681 10378706 ~ 10496809 (+)
XLOC_000135 NA coding downstream 137019 10462044 ~ 10462882 (+)
XLOC_000136 NA coding downstream 292499 10617524 ~ 10617930 (+)
XLOC_000137 NA coding downstream 320239 10645264 ~ 10668028 (+)
XLOC_000121 NA non-coding upstream 366204 9946664 ~ 9951873 (+)
XLOC_000120 NA non-coding upstream 403447 9886955 ~ 9914630 (+)
XLOC_000116 BX323038.1 non-coding upstream 1032726 9277846 ~ 9285351 (+)
XLOC_000111 NA non-coding upstream 1185587 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 1341655 8967479 ~ 8976422 (+)
XLOC_000138 NA non-coding downstream 320339 10645364 ~ 10680841 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_01527830_01531871 NA coding CI01000300 null 1527830 ~ 1532019 (+)