Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000245 |
| length | 904 |
| RNA type | processed_transcript |
| GC content | 0.47 |
| exon number | 4 |
| gene id | XLOC_000132 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 10318077 ~ 10325025 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046856 | phosphatidylinositol dephosphorylation | biological_process |
| GO:0005764 | lysosome | cellular_component |
| GO:0005765 | lysosomal membrane | cellular_component |
| GO:0005768 | endosome | cellular_component |
| GO:0031902 | late endosome membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0034597 | phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-121214-195 | Predicted to enable phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity. Predicted to act upstream of or within phosphatidylinositol dephosphorylation. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human PIP4P1 (phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1). |
| ensembl_id | ENSDART00000152779 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00000233 | lncRNA | upstream | 262774 | 10054408 ~ 10055303 (+) | True | XLOC_000126 |
| TCONS_00002811 | lncRNA | upstream | 366204 | 9946664 ~ 9951873 (+) | True | XLOC_000121 |
| TCONS_00000220 | lncRNA | upstream | 403447 | 9886955 ~ 9914630 (+) | False | XLOC_000120 |
| TCONS_00000214 | lncRNA | upstream | 1032726 | 9277846 ~ 9285351 (+) | True | XLOC_000116 |
| TCONS_00000210 | lncRNA | upstream | 1156602 | 9157376 ~ 9161475 (+) | True | XLOC_000113 |
| TCONS_00003034 | lncRNA | downstream | 138772 | 10462044 ~ 10462882 (+) | True | XLOC_000135 |
| TCONS_00002812 | lncRNA | downstream | 294252 | 10617524 ~ 10617930 (+) | True | XLOC_000136 |
| TCONS_00003035 | lncRNA | downstream | 321992 | 10645264 ~ 10668028 (+) | True | XLOC_000137 |
| TCONS_00003036 | lncRNA | downstream | 322092 | 10645364 ~ 10680841 (+) | True | XLOC_000138 |
| TCONS_00000251 | lncRNA | downstream | 339040 | 10662312 ~ 10663525 (+) | True | XLOC_000139 |
| TCONS_00000244 | mRNA | upstream | 2871 | 10305611 ~ 10315206 (+) | True | XLOC_000131 |
| TCONS_00000243 | mRNA | upstream | 14033 | 10297027 ~ 10304044 (+) | True | XLOC_000130 |
| TCONS_00000242 | mRNA | upstream | 82740 | 10221568 ~ 10235337 (+) | True | XLOC_000129 |
| TCONS_00000241 | mRNA | upstream | 180301 | 10129099 ~ 10137776 (+) | True | XLOC_000128 |
| TCONS_00000240 | mRNA | upstream | 180625 | 10127163 ~ 10137452 (+) | False | XLOC_000128 |
| TCONS_00000248 | mRNA | downstream | 55434 | 10378706 ~ 10448524 (+) | False | XLOC_000134 |
| TCONS_00000249 | mRNA | downstream | 55434 | 10378706 ~ 10496799 (+) | False | XLOC_000134 |
| TCONS_00000250 | mRNA | downstream | 55434 | 10378706 ~ 10496809 (+) | True | XLOC_000134 |
| TCONS_00000252 | mRNA | downstream | 360571 | 10683843 ~ 10696603 (+) | False | XLOC_000140 |
| TCONS_00000254 | mRNA | downstream | 397022 | 10720294 ~ 10739221 (+) | True | XLOC_000141 |
| TCONS_00000236 | other | upstream | 230552 | 10082478 ~ 10087525 (+) | False | XLOC_000127 |
| TCONS_00000231 | other | upstream | 260020 | 10051784 ~ 10058057 (+) | False | XLOC_000126 |
| TCONS_00000232 | other | upstream | 260269 | 10054019 ~ 10057808 (+) | False | XLOC_000126 |
| TCONS_00000230 | other | upstream | 263306 | 10051774 ~ 10054771 (+) | False | XLOC_000126 |
| TCONS_00000213 | other | upstream | 1096461 | 9218648 ~ 9221616 (+) | True | XLOC_000115 |
| TCONS_00000247 | other | downstream | 40448 | 10363720 ~ 10363851 (+) | True | XLOC_000133 |
| TCONS_00000253 | other | downstream | 360723 | 10683995 ~ 10696328 (+) | True | XLOC_000140 |
| TCONS_00000258 | other | downstream | 1057225 | 11380497 ~ 11380611 (+) | True | XLOC_000145 |
| TCONS_00000259 | other | downstream | 1146264 | 11469536 ~ 11469650 (+) | True | XLOC_000146 |
| TCONS_00000263 | other | downstream | 1368476 | 11691748 ~ 11695168 (+) | True | XLOC_000148 |
