Fish Transcriptome and Expression Database

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model fish

XLOC_000146 (CU929311.1)

Basic Information

Item	Value
gene id	XLOC_000146
gene name	CU929311.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007112.7
NCBI id	CM002885.2
chromosome length	59578282
location	11469536 ~ 11469650 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000259
ttcggcagctagctctctgcaactcacacatggttgcccactgaagccaagcagggctgaacccggtcagtacctggattggagaccacatgggaaagctaggttgctgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113410

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00000259	True	115	rRNA	0.56	1	11469536	11469650

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_000145	CU929103.1	coding	upstream	88925	11380497 ~ 11380611 (+)
XLOC_000144	knstrn	coding	upstream	351606	11107688 ~ 11117930 (+)
XLOC_000143	NA	coding	upstream	682219	10780928 ~ 10787317 (+)
XLOC_000142	cnga3b	coding	upstream	692989	10771457 ~ 10776547 (+)
XLOC_000141	atp1b1b	coding	upstream	730315	10720294 ~ 10739221 (+)
XLOC_000147	GNA12	coding	downstream	190211	11659861 ~ 11668782 (+)
XLOC_000148	eif3bb	coding	downstream	220710	11690360 ~ 11707665 (+)
XLOC_000149	si:dkey-26i13.8	coding	downstream	241576	11711226 ~ 11733130 (+)
XLOC_000150	chst12b	coding	downstream	266770	11736420 ~ 11737595 (+)
XLOC_000151	snx8b	coding	downstream	411909	11881559 ~ 11900420 (+)
XLOC_000138	NA	non-coding	upstream	788695	10645364 ~ 10680841 (+)
XLOC_000137	NA	non-coding	upstream	801508	10645264 ~ 10668028 (+)
XLOC_000139	AL953910.1	non-coding	upstream	806011	10662312 ~ 10663525 (+)
XLOC_000152	NA	non-coding	downstream	463667	11933317 ~ 11933676 (+)
XLOC_000155	NA	non-coding	downstream	576842	12046492 ~ 12048509 (+)
XLOC_000166	CT033816.1	non-coding	downstream	961678	12431328 ~ 12431442 (+)
XLOC_000167	BX511261.1	non-coding	downstream	1073709	12543359 ~ 12543475 (+)
XLOC_000168	NA	non-coding	downstream	1203335	12672985 ~ 12677022 (+)

Expression

Co-expression Network