XLOC_000149 (si:dkey-26i13.8)


Basic Information

Item Value
gene id XLOC_000149
gene name si:dkey-26i13.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11711226 ~ 11733130 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000264
CCTCGCGCCAGCACACGCCGCCACAGTGTCTTACATGCAAGTTTAAAAGCCGCAAACCCCCTTAAACCTTTATGATTTACCCCTGTTAAATCGTTCACACTCTTACAAACTAGTCTGTCTATATTTTAGGCTGCAGTTAATGTTTTTTAGCTGCTCTGAGGGGATGGCTTGGCATCTCCGCATGGCAGGTTGTTTTACGCCTCTAGGGGTTTGATCTCCGTTAACAACAGTCCGCTGGTGACTCCAGGACCTCCGCTGAGGCCAGCATGAGATTACCCAGCCATCAAGAAGATTAACTAACCCACGAACAGGTCGGAGTAACGGGAACTCGGGAATAAAAACATGAAGGATTTGCCAGGAGAATGGATGGACCATCAGCTCACGGTTGCTCTGCGCATTCGGCCACTAAATGAAGCAGAGATCGAGGAAGGGGCAACCATAGTGGCACACAAGATCGACAATCAGATGGTGGTGTTAATGGACCCCTGCGAGGACTCTGACAATGTCTTGAGGGCACATCGCTCACGTGAAAAAACATACATGTTTGATCTGGCATTTGATTACACTGCCACACAGGAGGATGTTTATGTGGCAACAACTAAGAATCTGATTGATGGTGTGATCGCTGGTTATAATGCCACTGTTTTTGCATATGGACCAACAGGAGCTGGAAAGACGCACACCATGTTAGGGCTAGATTCTGAGCCTGGCATTTACATCCGAACACTCAATGATCTCTTCAGAGCCATTGAAGACAGTACTGAAGACTTGGACTGCAGTGTTTATATGTCATATATAGAGATTTACAATGAGATGATCAGAGATCTGTTGAATCCCTCTTCTGGATATCTTGAGCTGCGTGAGGACGGTAAAGGGGAAATACGAATAGCAGGCATCACTGAATTCTCCACGTGTAATGCTAAAGAGATAATGGCTCTATTGACAAAAGGAAACAAACAGAGGACCCAGGAGTCAACAGCTGCTAACAAGACGTCTTCTCGGTCTCATGCTATACTTCAGGTGACAGTGAAGCAAAAGAGCCGTGTAAAAGATATCAACGAGGAGGTCAGGGTGGGGAAGCTATTCATGGTGGACTTGGCAGGAACGGAGCGTGCATCACAGactCAAAACAGAGGAAAGAGAATGAAGGAAGGAGCACATATAAACCGTTCCCTGTTAGCGCTGGCCAACTGCATCAATGCCTTGAGCGAGAAAGGTGGAAAAGGGGCTCAGTTTGTCAACTACAGAGACAGCAAACTCACTCGACTTCTTAAAGATGCTTTAGGAGGAAACAGTCGCACCGTCATGATTACCCATATCAGTCCTGCAAGCTCCAATTTTGAGGAATCCAGAAACACATTAGTTTATGCTGACAAAGCCAAAAATATACGAAccaagGTGAAACGTAATTTGATGAATGTCTCCTATCACCTGGCCCAATACACCCGCATTATTGCAGATCTGCGAAGTGAAATTGAACGACTTCGGGCAAAGATCGATCAACAAAGTCAAGATCAACTGAAAGGAGAGAAAGCAGACATCCGTAACATTCAAGCTGAAGTGCAACAGTACAGTCATGGTGAGATGGCTTTACTGCAGGAGCAGCTCCTGTCTGCCTTCAGGGAGCAGATGGAGATCAGACGCAGCCTCATGGAACTGGAGAACTGCAATATGGAACTGCACATAGACACATCCAGACATCTGCTCACCATTTCAGATTGGGAGCGAGATCGAGCACGTGCCAGGCGAGAGAAAGATGAGTTATCTGGACAGAAGAAACACACAGACAAGGAGGAAGAGCAAGAGAGCATGCCAGAGGAGCCTCAATATGTTACAGCAGCTCGAGAGGAGATCGGCCCTCTACTGGCTGAACAGAGGAAGACAATGGAGCTAAAACGAGAACTGGAGGAAAAACTATTGAACATGAAGCTGAAGTCATCTAAGATTGAGGAGTTGCTCCCTAAACGCATAAGCAACACTGAGCAGAGAGACATTCTGATGCTGCTTTGTAAAGTCCATGAACTTGAACTGGAGAAAACTGAAATCCAGTCAGCTGTTCTGTGCAAAGAAAACGTTCTCCGCACAAAAGACTTCATCATTCAGCGGCACGAGCAGCAGCGGACGCTCTGCGATGACATCATACACCAGCAGAAGATGCTAATTGAAGATCAAGGACTTTGTGTACCTGAGGGATTGCAAGAGCTTTATTCGCTGTACTTTGGTGAATTAAGTGATGGAATCATTGACCAAATACTGAACCTTCACACTTTCacaacaaacaatttaaatGCCAGGCAACTGAGACTTGATGTCATCTCCAATTTAGAAGAAGCAGATAAAGCAGAGCAAAGCAACGTGAAATTCAGTCCTTTAGATAAACATCCCCGTGACTCTTCTTCATCTGGGCTGGATTATGACAGTGACACTAACAGAGTTTTTAAATCACTGTCTAAAATTAAACCTCGGAGACAGCACCATTCATCTTCTAGCCAGACTCTTATGAGGAagGTTTGTGCTGTTAAGGATTCAACTCCTATATGTCCAACTGAATCTGTGAGTCCAGACACTCTGAGGGAAATTGTCAGCGACACTAAAAGCATCTCGGTCATAGCAGCGAAACGGCGCTCTCGCCTTCAAGCAAAGTCCAATTCCAGGATGGCTGGTATGGGTTTGGCCGCAGGGCTCAACATCTCAGACAACCACCTTGTGCGGCCAGCATTAAACATCATCCAGCCACTCAATGGCGGTCCTGCAAACCCTGCAACACCTCCAGTAGCAAAAGTGAAAATCCCGGTTTCTCACTTTACAGGTGAAGTACAGTTTCAAAAGTTGGAGATCAGGGGAACACCACCCAGCACCATCCATCAAAAACACTCAGACACCAAACGAGCGCAGGCCGTCTACAAACGACAGCGAGGCCAAGGAGATGTTTGTTACCCCAGCAGTCTCCTCCAGCAAGCAGGCAATTACAAGAAGTCCACCAATGAAAATCCTAAACAAAAAGCAATGGCCGATGTCAACAGAAAGAACGAAACACGGCAAAGGAACAAACATGCTGTAAAAAAGTCATACGTCTGAGTTTTTAGTGCTTATAAGAGAGATCTACTTTTTGCTTTGCAATGTAC
>TCONS_00000265
CAGCCATCAAGAAGATTAACTAACCCACGGCTTTTGGACACTCCAGAACAGGTCGGAGTAACGGGAACTCGGGAATAAAAACATGAAGGATTTGCCAGGAGAATGGATGGACCATCAGCTCACGGTTGCTCTGCGCATTCGGCCACTAAATGAAGCAGAGATCGAGGAAGGGGCAACCATAGTGGCACACAAGATCGACAATCAGATGGTGGTGTTAATGGACCCCTGCGAGGACTCTGACAATGTCTTGAGGGCACATCGCTCACGTGAAAAAACATACATGTTTGATCTGGCATTTGATTACACTGCCACACAGGAGGATGTTTATGTGGCAACAACTAAGAATCTGATTGATGGTGTGATCGCTGGTTATAATGCCACTGTTTTTGCATATGGACCAACAGGAGCTGGAAAGACGCACACCATGTTAGGGCTAGATTCTGAGCCTGGCATTTACATC

Function

symbol description
si:dkey-26i13.8 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and plus-end-directed microtubule motor activity. Acts upstream of or within cilium assembly. Located in motile cilium.

GO:

id name namespace
GO:0044782 cilium organization biological_process
GO:0007018 microtubule-based movement biological_process
GO:0060271 cilium assembly biological_process
GO:0031514 motile cilium cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-134 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and plus-end-directed microtubule motor activity. Acts upstream of or within cilium assembly. Located in motile cilium.

Ensembl:

ensembl_id ENSDARG00000062606

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000264 False 3125 mRNA 0.46 22 11711226 11733130
TCONS_00000265 True 460 mRNA 0.47 6 11711503 11719021

Neighbor

gene id symbol gene type direction distance location
XLOC_000148 eif3bb coding upstream 3561 11690360 ~ 11707665 (+)
XLOC_000147 GNA12 coding upstream 42444 11659861 ~ 11668782 (+)
XLOC_000146 CU929311.1 coding upstream 241576 11469536 ~ 11469650 (+)
XLOC_000145 CU929103.1 coding upstream 330615 11380497 ~ 11380611 (+)
XLOC_000144 knstrn coding upstream 593296 11107688 ~ 11117930 (+)
XLOC_000150 chst12b coding downstream 3290 11736420 ~ 11737595 (+)
XLOC_000151 snx8b coding downstream 148429 11881559 ~ 11900420 (+)
XLOC_000152 NA coding downstream 200187 11933317 ~ 11933676 (+)
XLOC_000153 tspan5b coding downstream 244296 11977426 ~ 11994710 (+)
XLOC_000154 slc24a2 coding downstream 276543 12009673 ~ 12044390 (+)
XLOC_000143 NA non-coding upstream 923909 10780928 ~ 10787317 (+)
XLOC_000138 NA non-coding upstream 1030385 10645364 ~ 10680841 (+)
XLOC_000155 NA non-coding downstream 313362 12046492 ~ 12048509 (+)
XLOC_000166 CT033816.1 non-coding downstream 698198 12431328 ~ 12431442 (+)
XLOC_000167 BX511261.1 non-coding downstream 810229 12543359 ~ 12543475 (+)
XLOC_000168 NA non-coding downstream 939855 12672985 ~ 12677022 (+)

Expression


Co-expression Network