XLOC_000139 (AL953910.1)


Basic Information

Item Value
gene id XLOC_000139
gene name AL953910.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10662312 ~ 10663525 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000251
AGGTTTTGCTCAGACTTTCGGGACGTTTGGAATTACTCCGTCTCGTCACCATAtaacacatagcagcaagacccatgggatttcatcagccactcaccatcagagtcctcagtggaagctgagaggagcagaagaggaagccaagcaagagatgccagaaaaaagggggaaggaaataatgtgttattttgtttgagtataggcaggtgcattgggtagcacaatcgcctcacagcaagaaggtcactagttcgagcctcggctgggtcagttgacatttctgtgtggagtttgcatgttctccccatgttagcgtgggtttcctccgggtgctcccacaagtccaaaaatactgtatgtggtgacattgggtaagctaaaattgttcgtattgtatgtgtgtgaatgagtgtgtatggatgtttcccagtgatgggttgcagctgggtggcaacacagtggcacagtaggtagtgctgtttcctcacagcaagaaggttgctggttcgagcctcggctgggtcagttggagtttctgcgt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103508

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000251 True 541 lncRNA 0.49 2 10662312 10663525

Neighbor

gene id symbol gene type direction distance location
XLOC_000136 NA coding upstream 44382 10617524 ~ 10617930 (+)
XLOC_000134 dachb coding upstream 165503 10378706 ~ 10496809 (+)
XLOC_000135 NA coding upstream 199430 10462044 ~ 10462882 (+)
XLOC_000133 AL935188.1 coding upstream 298461 10363720 ~ 10363851 (+)
XLOC_000132 pip4p1b coding upstream 337287 10318077 ~ 10325025 (+)
XLOC_000140 MPC2 coding downstream 20318 10683843 ~ 10696603 (+)
XLOC_000141 atp1b1b coding downstream 56769 10720294 ~ 10739221 (+)
XLOC_000142 cnga3b coding downstream 107932 10771457 ~ 10776547 (+)
XLOC_000143 NA coding downstream 117403 10780928 ~ 10787317 (+)
XLOC_000144 knstrn coding downstream 444163 11107688 ~ 11117930 (+)
XLOC_000121 NA non-coding upstream 710439 9946664 ~ 9951873 (+)
XLOC_000120 NA non-coding upstream 747682 9886955 ~ 9914630 (+)
XLOC_000145 CU929103.1 non-coding downstream 716972 11380497 ~ 11380611 (+)
XLOC_000146 CU929311.1 non-coding downstream 806011 11469536 ~ 11469650 (+)
XLOC_000152 NA non-coding downstream 1269792 11933317 ~ 11933676 (+)
XLOC_000155 NA non-coding downstream 1382967 12046492 ~ 12048509 (+)

Expression


Co-expression Network