XLOC_000141 (atp1b1b)


Basic Information

Item Value
gene id XLOC_000141
gene name atp1b1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10720294 ~ 10739221 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000254
GAATTCGCTGCTCAAGTGGACAAACAAAACCTTACAGTACACCATGCCCGCTCAAAATAAAGACGACGGAGGATGGAAGAAGTTTGTATGGAATTCGGAGAAGAAGGAATTTCTAGGACGTACCGGCGGGAGTTGGGCAAAAATCTTCCTCTTCTATCTCATCTTTTATGGCTGTCTGGCCGGGATCTTTATCGGCACCATTCAGATTCTCCTCCTCACCCTGAGCGATTACAAACCCACCTGGCAGGACAGAGTCGCTCCTCCAGGTCTCACTCATTTCCCACGTTCAGACAAGTCTGAGATTGCCATTAACCTGGATGACGAGGTGTCGTTCCTGAACTACGTCAAAGTCATGAGAGAGTTTCTGACATCCTACGACCAGGAAAAACAGTTAGACAATATGCAGTTTGAAAACTGTGGAGAATCACCCTTGGACTACAAAAACAGAGGTGATCTGGAGAGTGACGTTGGGGTTAGGAGGGCCTGTCAGTTTTCGAGGGAGTGGCTTGGACCCTGCTCTGGCCTGGACGACCCTTATTTTGGATTTAAGGAAGGGAAGCCCTGCCTTATTGCCAAACTCAACAGGATTGTGAACTTCAGACCTAAGCCACCAGTATCAAATGAAAGCATTCCGGAAGAGGTTCAGCACAAAGTCCAGCCCTATCTTATTCCCATCCACTGCACAAATAAGAAAGAGGAGGATGCAGGTAAGCTGGGTGAGGTGAGGTACTACGGTTTTGGCGGAGGCTTCCCTCTTCAGTATTACCCCTATTACGGCAAACTTCTGCACCCTCAGTACCTGCAGCCGCTGGTGGCCATTCAGTTCCTCAACATCACTCCCAACACGGACATGCGCATCGAGTGCAAAGTGTACGGGGAAAACATTTATTACCACGACAAGGACCGCTACCAGGGACGATTCGACGTTAAATTCAACATTAAAAAATCATGACCTCAAAACACTACCTCCATTCTCTCCCTACTGAAAGGCAAACTAAGGCCCCTCTTCTGACTTGAGATACAGAGAGAAGTTTCTCACCGGTCTTCCACAGCGTTTAACCGAGGAGatgtgtcttttgttttgttttttcctgaatGTACAAAGTGTCTCACGTCAGAAAGAGGCCTCATTTTAGTTCAGGAGAGAttaagtcaaaacaaacaaataattaaaaaagtgaataaacatgatatatacatatatacacacacacatatacatacagtgagcaaaaaagtattaaacatgtcacctttttttctcagaaaacaaatttctaaagatgctgttgacttgaaatttttctTAGACGTCAGTAATTTACattcaaagaaaataaaactaattaatttagaaataaagtcacgtgtaataaaatgaaatgacatagggaaaatgtattgaacatatgaagaaaggaaggtgcaAAAAACGCATGGAAAGACCAGACAGCAGCTCAAATATCTGCTTCTACATTCGAAATTGCTAACTTTCCCTTTTATGTagtatgtgaaaaacagtattgttcaccaagtagtatgtccgaatttagAGTTTTCAAAAAATACCTAATGTTTCCCGTGAAATTCCAGTGGATGCTACACTGTAATGCCTTTAATGCcacatgagagaattcatgaatgggaggaAAGTGAAGTGACGCAACCAGGGTTTAATTTGGGCTGGAACAAGCCGGATCCGGAACCTCATTTTAGCCACCTATACCCACCATGGCCCCTGGTCAGAATATAAGCTGTTTCAATGCCAACATCTGCAttaccagggtggacatttcagcaagacaatgatcccaaacacagaCAAGCTGACTCTCAATTggtttcaaaaaagaaaataaagctgctacaATGGCTTAgacaatcacctgacctgaacccAATGCAGACatatagacgagacccacagaaacgtcaagatttttacactctgttgaagtctaaaAAAAACTAGCTAAGCAATGGATACAACTCCATTCTCCATACAAGAGGTGTCTTAAATAAAAAAGGTGTCTTGCCCCCCCTCAAAGTATTTACAAAGTATTAAATAGATTTCAGAAGTTCATTACCTTCTCCTTGTGTAATTACACAAAACGTTATTTCTGAAATTTATTTTTGGAAGTTTGGATTGTTTGGGGTTTTGACCAAAATCTGAGTCAATTTcacgtcaacagctcctttagataTATATTTACCAGGAAAAATCATGACTTGTTTAATACTATTTTTACCCgctgtatatatacacaaaaaaaaaaaaa

Function

symbol description
atp1b1b Predicted to enable ATPase activator activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport and sodium ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Is expressed in ectoderm; epidermal cell; integument; ionocyte progenitor cell; and nervous system. Human ortholog(s) of this gene implicated in essential hypertension. Orthologous to human ATP1B1 (ATPase Na+/K+ transporting subunit beta 1).

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005890 sodium cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001127-4 Predicted to enable ATPase activator activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport and sodium ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Is expressed in ectoderm; epidermal cell; integument; ionocyte progenitor cell; and nervous system. Human ortholog(s) of this gene implicated in essential hypertension. Orthologous to human ATP1B1 (ATPase Na+/K+ transporting subunit beta 1).

Ensembl:

ensembl_id ENSDARG00000076833

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000254 True 2279 mRNA 0.41 6 10720294 10739221

Neighbor

gene id symbol gene type direction distance location
XLOC_000140 MPC2 coding upstream 23691 10683843 ~ 10696603 (+)
XLOC_000138 NA coding upstream 39453 10645364 ~ 10680841 (+)
XLOC_000137 NA coding upstream 52266 10645264 ~ 10668028 (+)
XLOC_000139 AL953910.1 coding upstream 56769 10662312 ~ 10663525 (+)
XLOC_000136 NA coding upstream 102364 10617524 ~ 10617930 (+)
XLOC_000142 cnga3b coding downstream 32236 10771457 ~ 10776547 (+)
XLOC_000143 NA coding downstream 41707 10780928 ~ 10787317 (+)
XLOC_000144 knstrn coding downstream 368467 11107688 ~ 11117930 (+)
XLOC_000145 CU929103.1 coding downstream 641276 11380497 ~ 11380611 (+)
XLOC_000146 CU929311.1 coding downstream 730315 11469536 ~ 11469650 (+)
XLOC_000135 NA non-coding upstream 257412 10462044 ~ 10462882 (+)
XLOC_000152 NA non-coding downstream 1194096 11933317 ~ 11933676 (+)
XLOC_000155 NA non-coding downstream 1307271 12046492 ~ 12048509 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location