RNA id: TCONS_00000236



Basic Information


Item Value
RNA id TCONS_00000236
length 821
RNA type processed_transcript
GC content 0.50
exon number 9
gene id XLOC_000127
representative False

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10074343 ~ 10124192 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATTCTCATTTCACTGAGAGTGATAGAATGTTTCATTTCACCCTCTGATCTGAAAACTACAATTAATGTGTaatttgtcCTTGCTGGACATCTGATAGAGTGTGGTGCTCAGGCCACAGGGGGAATCTTCACCGACTGGCACACTGTTCCTGACTGGGATAACATGGGCTTCCCGGTGGTGGAGTGTTCTGCTGATGGTTCATTTACACTCTGCAAACCTCCAAAAACCGGTGGGCTGGTTTCATTTGGTACGGTGGCAGAGCAGCTGGTGTATGAGATTGGAGACCCACGGCATTACCTCCTTCCTGATGTAACCTGTGACTTCTCCAATGTCACCATTACTGAAATAACAGATGTGGATGGCGGAGCCGTGAAAGTCGGTGGTGCCAAGGGATCGCCTCCATCAGGCGACTACAAGGTTTGCGCCACATATATGGATGGGTTCAGGGCGACAGCAGTTTGTCCTGTTGGTGGCCCGAGAGCGGTGGAGAAAGCTAGAAGAACAGCGGAGAGCATAATCAAAAGGACCCAGCGAATTTTCAAACAGCTGGGTTTGGAGGATTATACTGAAGTCAATATTCAAGTTCTGGGTGCTGAGGACACATATGGACCCCATGCAGTCAATACAGGAGTTCGTGAGGCCGTGGTTTGGATGGCCGTCCATCACAAGCAGAAGAAAGCACTGGAGTTTTTCTCCAGAGAGGTCGCACCAGCGGGAACTGGCATGGCTCCAGGACTCACAGCAATTGTAGGAGGGCGACCAAGAATATCCCCAGTGCTGAAGCCTTTCTTTTTCCTGTATCCCAAATCAGATCTTGAGGT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000172059

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00000233 lncRNA upstream 27175 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00002811 lncRNA upstream 130605 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000220 lncRNA upstream 167848 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00000214 lncRNA upstream 797127 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000210 lncRNA upstream 921003 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003034 lncRNA downstream 374519 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00002812 lncRNA downstream 529999 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00003035 lncRNA downstream 557739 10645264 ~ 10668028 (+) True XLOC_000137
TCONS_00003036 lncRNA downstream 557839 10645364 ~ 10680841 (+) True XLOC_000138
TCONS_00000251 lncRNA downstream 574787 10662312 ~ 10663525 (+) True XLOC_000139
TCONS_00000229 mRNA upstream 22982 10051763 ~ 10059496 (+) False XLOC_000126
TCONS_00000227 mRNA upstream 49365 10018466 ~ 10033113 (+) False XLOC_000125
TCONS_00000226 mRNA upstream 50170 10003193 ~ 10032308 (+) False XLOC_000125
TCONS_00000228 mRNA upstream 50170 10019653 ~ 10032308 (+) True XLOC_000125
TCONS_00000225 mRNA upstream 82102 9994813 ~ 10000376 (+) True XLOC_000124
TCONS_00000237 mRNA downstream 22678 10110203 ~ 10113235 (+) False XLOC_000127
TCONS_00000238 mRNA downstream 22692 10110217 ~ 10119029 (+) False XLOC_000127
TCONS_00000239 mRNA downstream 30930 10118455 ~ 10124192 (+) True XLOC_000127
TCONS_00000240 mRNA downstream 39638 10127163 ~ 10137452 (+) False XLOC_000128
TCONS_00000241 mRNA downstream 41574 10129099 ~ 10137776 (+) True XLOC_000128
TCONS_00000231 other upstream 24421 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other upstream 24670 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000230 other upstream 27707 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000213 other upstream 860862 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000209 other upstream 926957 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000245 other downstream 230552 10318077 ~ 10323272 (+) False XLOC_000132
TCONS_00000247 other downstream 276195 10363720 ~ 10363851 (+) True XLOC_000133
TCONS_00000253 other downstream 596470 10683995 ~ 10696328 (+) True XLOC_000140
TCONS_00000258 other downstream 1292972 11380497 ~ 11380611 (+) True XLOC_000145
TCONS_00000259 other downstream 1382011 11469536 ~ 11469650 (+) True XLOC_000146

Expression Profile


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