RNA id: TCONS_00000226


Basic Information

Item Value
RNA id TCONS_00000226
length 2587
RNA type mRNA
GC content 0.51
exon number 12
gene id XLOC_000125
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10003193 ~ 10033113 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGATCACAAGTGTAAACCACAGACTGTAAAAAAAGGtgaaaacatgtatttttttggTATGACAGGAGGCAGAAAAACAATCAAGGTTGAGGGAGAGCGCAGAGATTATTTGCTTTTTTAGTCAGTGAGGCTGCACATTCTGTCCCGTGATTGGCTACTGAGCAACACTCAGCGTTCGGCTCCGCCCCTACGGCATGCTGGTGTGAGTCGCTTATGTCGCTGTAGTGCAGAAAGAGAAGAGCCTGTGCGAAAACAGCCCTCCACCCCTCCTCTCCGGGAAACGGGTCTCAGGCTGATGAGTAAGGCGAGGAGAGCCCGTATAGCTGCTGCATCTGAAGCTACAGAGCAATGGAGGGAAGGGTCCAGTGTCAAATGAGGGGACGCTGTGATTCCCCCCTGCAACCTGTGCTTGTTTTGGGTCTCCAGTGCATCAAATACACTCTCTTACCTTAATAATTTGGTATTACATAAAAAAAGTATACGCAGACTTTCATGCACATCGCCTGAACTTCATCTCTTAGGGTCTGTGCTTTCTGCATCCTTGTATTGTGGGTGCTGTTCCTCCGTCCACCCGCATGGAGGCGCCGCAGGCTTCTCCTGACAGCAGCAGTGAGGAGTGTACTGTACTAGAGGCTCTGCCTGGCAAGGGAACTGCGCTCATTTGCTCTCAACACAAAGGAAAAGTGTCTGCGCTGTACTGTTTGGTGTGTGAGAATGCAGTGTGTGAAGACTGTATGAACGGAGAACACGCTGAGCATCCCACAGATTCTCTGGAGAAAGCTGTGGATCAACAACTAGCGGCACTGCAGGACAAAGTGGATTCAGCCAAGAACAGGCTCCCTCAGATCAGAGAAGCGGTTCAGTATCTGAGAGAGATCCTGCAGCAGTTGAACTCTCAGCGCAGCTCCATTGAGGAGGACATTCACTCGTCCTTCAGCGAACTGCACAAAACCCTCGACACCAGGAAGAGCGTCCTGCTGATGGAGCTGGAGGTCACGTACGGACTCAAGCAAAAAGTCCTGCAGGCTCAGTTAGACACTCTCCTCCAGGAAGAATCTGCCATCAACTACAACTGCAGCCTGACCAGCGAAGCTCTGGACGGAGGAAGCAAAGCCTCTGTCCTGCAGGCCCATAAAGAGGCGGGAGAGCGACTCGGTGACCTGTCCAGCCAGGGCCTTCCTCTCCAGCCTGAAGAGAACGACCAGCTCGACCTCATGATGGAGATCGAAGGCCTGCGCAAGTCCATCCACAACCTGGGCACCATCGTCACCACCAATGCCGTGGCCAGCCAAACTGAGGCGTCCGGAGACGGTCTGGAGCAATGCATCGTGGGTCAGCCGGCATCCGTCATCATAACCACGAGAGATAAAGCTGGAGGACTGTGCAAGACTGGAAACGCCATTATCTCGGCTGAAGTTTACACACCGGACGGAAGCATCGCAGACGGAGAAATTGTAGATATGAAAAATGGAACGTATGAATTTCAATACACGGTGAAGAAAGAAGGCAACTTCAGTCTGGCGCTGAGACTTTATGATCAGCATATTAAAGGAAGCCCATTTCAGCTAAAGGTGAGCAGTTCTCCAGATGATTCTCCGACGACCACCACCGCAGCCAACGCCGCGTCCACCGGCTCCAGCGATGGAGGAGCGAGAAAAAGGAGCGCCAAATCTCCAGGGAGCCGCAGCCGGCAGAAGGGCGTCAGACGAGGAGGAAGCTTGTTCAGCACACCCAAAAAAAGGGTGAACCCCATCGAGGACGACCTGATTTTTAGAATAGGAACAAAAGGGAGGAATAAAGGAGAGTTCACTAACCTTCAAGGAGTCGCAGCTTGTTCAGAGGGAAGAATCTTAATCGCAGACAGTAACAATCAGTGTGTGCAGATATTTTCCAACACGGGTGAGTTTCAGAGCCGGTTCGGGGTGCGTGGTCGTTCACCGGGTCAACTACAGCGGCCCACTGGAGTAGCTGTACATCCCAACGGGGACATCATTATCGCTGACTATGACAATAAGTGGGTTAGCATCTTCTCCAGCGAAGGCAAATACAAGGCTAAGCTGGGCTCAGGACGGCTGATGGGGCCGAAGGGGGTTTCTGTGGACCAGAATGGTCATGTTATTGTTGTGGACAACAAGGCCTGTACGGTTTTCATCTTCCAGCCCAGCGGGAAACTCATCACTAAGTTTGGCAGCAGGGGCAACGGAGACAGACAATTTGCAGGCCCACACTTTGCTGCAGTGAACAACAATAATGAAATCATCATCACAGACTTTCATAACCACTCTGTTAAGGTATTTAATGCAGATGGGGAATTCTTGCTTAAGTTTGGCTCAAATGGTGAAGGAAACGGCCAGTTTAATGCTCCCACTGGCGTTGCTGTGGATGTCAATGGGAACATCATTGTGGCCGACTGGGGAAACAGTCGCATACAGGTGTTTGACGGGAGCGGGTCATTCCTGTCCTACATCAACACGGCAGCGGACCCTCTGTATGGGCCACAGGGTCTGGCTTTAACCTCAGACGGTCATGTAGTGGTGGCTGATTCTGGAAACCACTGCTTCAAAGTCTACCGTTACCTGCAATGA

Function

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-70 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2R. Orthologous to human TRIM2 (tripartite motif containing 2).

Ensembl:

ensembl_id ENSDART00000162675

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002811 lncRNA upstream 51320 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000220 lncRNA upstream 88563 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00000214 lncRNA upstream 717842 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000210 lncRNA upstream 841718 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003033 lncRNA upstream 847672 9154094 ~ 9155521 (+) False XLOC_000113
TCONS_00000233 lncRNA downstream 22100 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00003034 lncRNA downstream 429736 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00002812 lncRNA downstream 585216 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00003035 lncRNA downstream 612956 10645264 ~ 10668028 (+) True XLOC_000137
TCONS_00003036 lncRNA downstream 613056 10645364 ~ 10680841 (+) True XLOC_000138
TCONS_00000225 mRNA upstream 2817 9994813 ~ 10000376 (+) True XLOC_000124
TCONS_00000224 mRNA upstream 2832 9994811 ~ 10000361 (+) False XLOC_000124
TCONS_00000223 mRNA upstream 21079 9966384 ~ 9982114 (+) True XLOC_000123
TCONS_00000222 mRNA upstream 36998 9954533 ~ 9966195 (+) True XLOC_000122
TCONS_00000221 mRNA upstream 38428 9954489 ~ 9964765 (+) False XLOC_000122
TCONS_00000229 mRNA downstream 19455 10051763 ~ 10059496 (+) False XLOC_000126
TCONS_00000234 mRNA downstream 42035 10074343 ~ 10114016 (+) False XLOC_000127
TCONS_00000235 mRNA downstream 42293 10074601 ~ 10101227 (+) False XLOC_000127
TCONS_00000237 mRNA downstream 77895 10110203 ~ 10113235 (+) False XLOC_000127
TCONS_00000238 mRNA downstream 77909 10110217 ~ 10119029 (+) False XLOC_000127
TCONS_00000213 other upstream 781577 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000209 other upstream 847672 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000208 other upstream 847920 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000154 other upstream 2939250 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 3215389 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000230 other downstream 19466 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 19476 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other downstream 21711 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000236 other downstream 50170 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000245 other downstream 285769 10318077 ~ 10323272 (+) False XLOC_000132

Expression Profile

//