RNA id: TCONS_00000221


Basic Information

Item Value
RNA id TCONS_00000221
length 1845
RNA type mRNA
GC content 0.43
exon number 11
gene id XLOC_000122
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9954489 ~ 9966195 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTACAGCTCACTTCAGCAACATCCTCCTCAACTGATCCACCATGAGGTTTCTACACATCCTGGCTCTCGGCCTCCTCGTCTGCGGCCTGTGTGCGAGAGCTGATGAGGAAAACACAGAGGAGAAATCTGAGGAGAAAGTTGAGGACAACTCTGAAGAAGACACAGAGCCAGAGAAGCCAGAAAAGACAGACGAAATTACAGAAGACAAAGACGTTTTAATTCTTCACAGCGTCAACTTTGACAGAGCTCTCAGTGAGAACAAATACCTGCTGGTGGAGTTTTATGCTCCATGGTGTGGACACTGTCGCAGTCTGGAGCCCATTTATGCTGAAGTGGCTGGACAGCTGAAAAATGCATCATCTGAAGTACGACTGGCCAAAGTAGACGCGATAGAAGAGAAAGAGCTTGCCTCAGAGTTCAGTGTGGACAGTTTTCCCACTCTCAAATTCTTCAAAGAAGGAAACAGACAAAATGCCACTACTTTCTTTGGAAAGCGAACTCTGAAAGGGATCAAAAGGTGGCTGGAGAAGCACACAGCGCCCAGCGCTACTGTCCTCAATGATGTGAAGAGCGCAGAGGCTCTGCTGGAGGCCAATGAAGTGCTTGTGGTCGGATTCTTCAAGGATTTGGAAGGAGAAAAGGCGAAGACATTCTATGATGTAACTTTAATTGCAGTGGACGTTAACTTTGGCATCACAAGCGACCCAGAGCTCTTCAAGAAGTATGAAGTGAAGACTGATTCGCTGGTGCTCTTCAAAAAGTTTGACGAAAGGCGGGCAGACATGCCACTCTCTGATGAAACCAAGCTGGACAAAGGAGAGAtgatttcattcatccattccaACAGTATGAGACTGGTCGTTCCATTCAACGAGGAGAATGCCGAACAAATTTTCAACTCCAAGGTCCGTAAGCATTTGCTTCTATTTCTTAATACAACAGTGGATTCCCAGAATGCATTAGTAGAGGAGTTTAGAGAGGTTGCCAGTGAGTTTAAGGAGAAGGTGATCTTCATCACAGTAGACGTTACGGCCGAAAAAGTAAATCACGTGCTGAAGTATTTCAGTATCTCGGAAGACGATGTTCCAACTATTCGTCTGATCAACACTGAGGATGTGGTCACATATGCAATGGATGGATCAACTATCAACAAAGACACACTGAGAACGTTTTGCCAGGGTGTTTTTGATGGTACCGTGAAGCCCTATTTAAAGAGTCAAGAAATTCCAGAGGACTGGGACAAGAATCCGGTTAAAGTCCTTGTGGGGAAGAACTTCAATGAAGTGGCTTTTGATGAGTCTAAGAACGTCTTTGTGGAATTTTATGCTCCATGGTGTGGTCACTGTCAACAACTTGCTCCTGTGTGGGATGAGCTAGGCGAGAAGTACAAAGACCAAGAGAATATAATCATTGCCAAAATGGACGCCACAGAAAATGATGTGGAAGATCTGACAATACAGGGATTTCCCACAATTAAATACTTTCCTGCTGGGACCGAAAAAAAGattgTTGACTATGATGGAAATAGAGATTTGGAGACTTTCTCAAAGTTCCTGGATAATGGAGGAGTTTTACCAAAAGAAGAGAGTAaagaagatgaagatgatgatgatgacgacaatgatgatgatgatgaagataagCCAACAGACGAATCAAAAGAAGAGTCACCAAAAGCCACCAATGAAACCGACAAGGATGAGCTGTAAAAACAAGGCTTAAATCAAGCGATCAATGTGATGTTTTTATGCAACATGAGCAAGATTGATGTCATTTTCTCTGCACTAGACAATTTGTATAAACTACAAACctgacaaaatataataaaaaaacacaagttTA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0034976 response to endoplasmic reticulum stress biological_process
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003756 protein disulfide isomerase activity molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-705 Predicted to enable protein disulfide isomerase activity. Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Is expressed in pancreas and pancreatic bud. Orthologous to human PDIA2 (protein disulfide isomerase family A member 2).

Ensembl:

ensembl_id ENSDART00000005895

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002811 lncRNA upstream 2616 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000220 lncRNA upstream 39859 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00000214 lncRNA upstream 669138 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000210 lncRNA upstream 793014 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003033 lncRNA upstream 798968 9154094 ~ 9155521 (+) False XLOC_000113
TCONS_00000233 lncRNA downstream 89643 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00003034 lncRNA downstream 497279 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00002812 lncRNA downstream 652759 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00003035 lncRNA downstream 680499 10645264 ~ 10668028 (+) True XLOC_000137
TCONS_00003036 lncRNA downstream 680599 10645364 ~ 10680841 (+) True XLOC_000138
TCONS_00000219 mRNA upstream 40250 9886991 ~ 9914239 (+) True XLOC_000120
TCONS_00000218 mRNA upstream 87633 9860381 ~ 9866856 (+) True XLOC_000119
TCONS_00000216 mRNA upstream 242187 9557212 ~ 9712302 (+) False XLOC_000118
TCONS_00000217 mRNA upstream 243244 9708801 ~ 9711245 (+) True XLOC_000118
TCONS_00000215 mRNA upstream 660374 9290103 ~ 9294115 (+) True XLOC_000117
TCONS_00000223 mRNA downstream 1619 9966384 ~ 9982114 (+) True XLOC_000123
TCONS_00000224 mRNA downstream 30046 9994811 ~ 10000361 (+) False XLOC_000124
TCONS_00000225 mRNA downstream 30048 9994813 ~ 10000376 (+) True XLOC_000124
TCONS_00000226 mRNA downstream 38428 10003193 ~ 10032308 (+) False XLOC_000125
TCONS_00000227 mRNA downstream 53701 10018466 ~ 10033113 (+) False XLOC_000125
TCONS_00000213 other upstream 732873 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000209 other upstream 798968 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000208 other upstream 799216 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000154 other upstream 2890546 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 3166685 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000230 other downstream 87009 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 87019 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other downstream 89254 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000236 other downstream 117713 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000245 other downstream 353312 10318077 ~ 10323272 (+) False XLOC_000132

Expression Profile

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