XLOC_000117 (uncx4.1)


Basic Information

Item Value
gene id XLOC_000117
gene name uncx4.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9290103 ~ 9294115 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000215
AAGTAGGAGAGAGCGAATAAGCCCGCACGCCTGCCTCGGTCTCCTTATTCCTAATTCGGGAGCGCAAGGCATGTCAACGCCGCACGTCCCTTCACGGCTGCTGCATGCGTTCTGAGGGAAGAGTTGGAGCTTGTTTTGGCCAGACGAACGCGAGATGCAATGATGGATAGCCGGATCCTCGAGCATCCTCATGCCCAATTTGGAGGCTCTTTGGGAAGCATGGTTGGAATGGGTTTCCCCTACCACCTCGGTCATCATCATGTTTACGATATCTCCGGACACCAGCTACAGTCGGCGGCCGCTGTACCTTTTTCTATAGACGGATTACTTAACGGATCATGCTCGGGGTCTGTTGCAAACTCCAACCCATTGCTTGGATCTGGTTGTGGTGTAAACGGGGATAGTCAATATAAACTGGGCGATGGCGGAGACCCCGACAAGGAAAGCCCTGGTTGTAAAAGGAGGCGAACACGTACAAATTTTACGGGTTGGCAGCTGGAGGAACTAGAGAAAGCCTTCAACGAAAGCCATTATCCGGACGTGTTCATGCGCGAGGCGCTCGCGCTACGTCTAGACCTTGTTGAGTCACGTGTTCAGGTTTGGTTTCAAAACCGGCGAGCCAAATGGCGCAAAAAGGAGAACACGAAAAAAGGGCCCGGTCGACCGGCTCACAACTCTCACCCCACTACCTGCAGCGGCGAGCCAATGGACCCAGAGGAAATAGCACGACGGGAGTTGGAGCGTTTGGAGAAGAAAAAGCGAAAACAGGAACGTAAACTGCTCAAGTCTCAGAACAAGCTCTTAGCCGGTGAGCTCTTCCACACGCCCGGTTCTGACAGCGACAGTGGAGTATCGCAAAGCACCGATAGCGAGTCCACTCCGCACACTGGGCCTCAGCATAGCGCGCACCGGCAGCAGACAGAACATATATGTGAGCAACATGCACGCCACCAAAGAGCCAGTACGGTCAATGAGACAGCGGAGCCCATGGACTCCACACGGAACTCTGGCCTGTGCCCCGCAAACGGCATCACACGCGCCTCCACGCTCCAGAAACTCAACCCATTTAGTGTGGAGAGTTTACTAGCCGACTCGAGTCCCAGGAGAAAAACTATCCTGGATTTTTCTCAGTTACCGCCGCAGCGACCACTGGTCGGTAAAGGCCATTTCCTTCTGTATCCCATTACCCAGCCGCTGGGTTTCATTGTGCCACAGACAGCGATGAAACAGAGTCATGATTCAGGAAACTCGGGTCACCACTGTTCCACGACAGACACCTCAACCTCAAACCAGAAAAATGTCAATCACTTGTGCAGAGACAACACCGGTGCAAGCGACGAGCTGCAGAGAGAAACCAAGAACTCTTCAATCCAGTCTCCAAGCACAAGCTCAGAGAAATGCTTTTCAGAATCTAACTCGCCACAAAAGGAGTCTGAAAATGACTCCGAGTCCACTGTCACAAACTCTAGTCAGAAAGAAAGCATCTCTGCTAACCTGTCTGAATATTCTGACAGGAAAAGCCGCAGTTCTGCTGACACAAATACAGATGGAGAGGATGTAGACATGGACTGAAATATAAATAGGCCAGAAGCAGTGGCGCCAAGTGACTTGTCACAATCCCAAAGCTGATAACGACACGTTTTTTTGTATACAAGACTGTTTGAATTCACTTTTTCTACTTTCCAGAAACGGATATTCTTTATTCAGGTGAACTGTCTGTCTGTTTCGGCTTAAAATGTTTGTTCCAGTTCAGTGGCTCTGCTCACTTGAAGGAGCAGGTTAGCTACACGAGCAGGACACACGAACAAAACATCCTCAAATCGTTGTATAAATGATAAAGTAtcgaaaatatttatatatgtatcattttgataagtaataataaaatattgtgaaaGAAAA

Function

symbol description
uncx4.1 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within cell differentiation; nervous system development; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including brain; corpuscles of Stannius; hindbrain neural keel; segmental plate; and shield. Orthologous to human UNCX (UNC homeobox).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050714-1 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within cell differentiation; nervous system development; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including brain; corpuscles of Stannius; hindbrain neural keel; segmental plate; and shield. Orthologous to human UNCX (UNC homeobox).

Ensembl:

ensembl_id ENSDARG00000037760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000215 True 1902 mRNA 0.49 3 9290103 9294115

Neighbor

gene id symbol gene type direction distance location
XLOC_000116 BX323038.1 coding upstream 4752 9277846 ~ 9285351 (+)
XLOC_000114 chtf18 coding upstream 62899 9199031 ~ 9227204 (+)
XLOC_000115 chtf18 coding upstream 68487 9218648 ~ 9221616 (+)
XLOC_000113 plk1 coding upstream 128260 9153141 ~ 9161843 (+)
XLOC_000112 rasd3 coding upstream 144207 9144958 ~ 9145896 (+)
XLOC_000118 elfn1b coding downstream 263097 9557212 ~ 9712302 (+)
XLOC_000119 pmm2 coding downstream 566266 9860381 ~ 9866856 (+)
XLOC_000120 NA coding downstream 592840 9886955 ~ 9914630 (+)
XLOC_000121 NA coding downstream 652549 9946664 ~ 9951873 (+)
XLOC_000122 pdia2 coding downstream 660374 9954489 ~ 9966195 (+)
XLOC_000111 NA non-coding upstream 157613 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 313681 8967479 ~ 8976422 (+)
XLOC_000105 NA non-coding upstream 324164 8950874 ~ 8965939 (+)
XLOC_000100 NA non-coding upstream 699467 8587230 ~ 8590636 (+)
XLOC_000133 AL935188.1 non-coding downstream 1069605 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 1167929 10462044 ~ 10462882 (+)
XLOC_000136 NA non-coding downstream 1323409 10617524 ~ 10617930 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_00864011_00867698 UNCX4.1, UNCX coding CI01000300 null 862740 ~ 868771 (+)