XLOC_000123 (si:dkeyp-75b4.8)


Basic Information

Item Value
gene id XLOC_000123
gene name si:dkeyp-75b4.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9966384 ~ 9982114 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000223
CCGATTGGGAGAATCAACACACAGATTCAGAATCAGATGGCTTGCTCTGATGAATCTGGCTCCAAATCCCCACCACCTTCATACAGTAACATGGATGAGATTCCTCTTTATGACGAGATAATCCCTCCACCGCCAACCATCAAAACTCCTGCCACACCACCGCCTGCCTACAATGAGCCCAacATTCCTCAAGGGATTCCATTAAACACATGTACAGGGGGACCAAACCCTTATCCCATCCTAAACCAGCCCACTCAAATAGCAGCGGTGACACAACAACAACAAGTGTTTGTGCAGCAGTCGGTGAATCCTGTAGCCCCGCAGGTGATCGTGGTTCAGCCACAACAAAGCACTACTTTAGATGACACACCAGCATCCATTGTGTGCAGGTATTGCCATCAGAGCATCGTCACTCATGTGGAGTATAAACCTGGTGTAATTTCATGGCTCATGTGCGTCGTAATAAGTTTCCTTGGGGGCATTTGCGGATGTTGTGTCATCCCATTTTTTGTCAGAGGATTTCTGGACGCCCATCACTCCTGTCCTTTATGCAAAAGGCACATAGGAATTTACACTCGCAAATGACTCTCCAAACTCTTGCAGacacaaatacaaaatataaaacatcataCTTGCATTAACCAAAATCATTATAGATATCTAATTAACTTTCAAGCAA

Function

symbol description
si:dkeyp-75b4.8 Predicted to enable metal ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-395 Predicted to enable metal ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000077542

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000223 True 679 mRNA 0.45 5 9966384 9982114

Neighbor

gene id symbol gene type direction distance location
XLOC_000122 pdia2 coding upstream 189 9954489 ~ 9966195 (+)
XLOC_000121 NA coding upstream 14511 9946664 ~ 9951873 (+)
XLOC_000120 NA coding upstream 51754 9886955 ~ 9914630 (+)
XLOC_000119 pmm2 coding upstream 99528 9860381 ~ 9866856 (+)
XLOC_000118 elfn1b coding upstream 254082 9557212 ~ 9712302 (+)
XLOC_000124 si:dkeyp-75b4.10 coding downstream 12697 9994811 ~ 10000376 (+)
XLOC_000125 trim2b coding downstream 21079 10003193 ~ 10033113 (+)
XLOC_000126 fgb coding downstream 69649 10051763 ~ 10059496 (+)
XLOC_000127 si:ch73-132f6.5 coding downstream 92229 10074343 ~ 10124192 (+)
XLOC_000128 rbm46 coding downstream 145049 10127163 ~ 10137776 (+)
XLOC_000116 BX323038.1 non-coding upstream 681033 9277846 ~ 9285351 (+)
XLOC_000111 NA non-coding upstream 833894 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 989962 8967479 ~ 8976422 (+)
XLOC_000133 AL935188.1 non-coding downstream 381606 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 479930 10462044 ~ 10462882 (+)
XLOC_000136 NA non-coding downstream 635410 10617524 ~ 10617930 (+)
XLOC_000137 NA non-coding downstream 663150 10645264 ~ 10668028 (+)
XLOC_000138 NA non-coding downstream 663250 10645364 ~ 10680841 (+)

Expression


Co-expression Network