RNA id: TCONS_00000241


Basic Information

Item Value
RNA id TCONS_00000241
length 2257
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_000128
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10127163 ~ 10137776 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gGATTATGGATGAACGCAGCAGTCAGCCGTCGGATAACAGTAGGATGGACAGCTCTAAAGAAGCTGCATTATTGGCCCTGATGGACAGGACAGGCTACAGCATGGTTCAGGAAAATGGTCAGAGAAAGTTTGGTGGTCCCCCTCCAGGCTGGGAGGGCCCTCCTCCTCCACGAGGTTGTGAGGTGTTTGTGGGTAAAATCCCGAGAGACATGTATGAAGATGAGCTGGTGCCTGTGTTTGAGCAAGCCGGTCACATCTACGAGTTTCGTCTGATGATGGAGTTCAGCGGAGAAAATCGTGGCTATGCCTTCGTCATGTACACCACCCGCGAGAAAGCCCAACGAGCCATTCAGCTCCTCGACAACTATGAAATCCGCCCTGGGAAGTTCATTGGAGTTTGTGTGAGTCTGGACAACTGTCGCCTTTTTATTGGCTCCATCCCAAAAGACAAGAAGAAGGAGGAGATCCAAGAAGAGATGATGAAGGTGACTGAAGGGGTCATGGATGTGATTGTGTATCCCAGCGCAGTGGACAGGATGAAGAATCGTGGCTTTGCCTTTGTTGAGTATGAATCCCACAAAGCAGCTGCCATGGCTCGCAGGAAACTAATACCAGGTACGTTTCAGTTGTGGGGTCACACCATCCAGGTTGACTGGGCCGAACCAGAAAAAGAATTAGACGAGGAAACCATGCAGCGAGTTCGAGTTCTTTATGTGCGGAATCTAATGCTGAGCACCACGGAGGAGACGCTTCGCTCTGAGTTCTCACAGCTGAAGCCTGGCTCTGTGGAACGTGTTAAGAAGCTGACGGATTATGCCTTCATCCACTTTTATAACCGCGAGGATGCCCTAACCGCTCTTGAGTCCATGAATGGGAAAGTTATTGATGGTTCGCCTATTGAGGTAACTCTTGCCAAGCCTGCTAGCAAAGATGGAAACAAAAGATTTGGACCGCGGAATTGCCACAATGGAGTGACCGCTGCTGGAGGCTACGGTGATTCCAACTTCTTGTTCCAGACCAGAAATGACATGACCATCGGAGCTATGGGCAATGGGTTAAACGCACACGCTCTCAGCCTGCCATATGCAGTGGACTTAGATCGCTGTGTGTATCCCTTCTTACCTGGGTCCACTTTGGTCCCAGTCAGCCTAAACACCGTTAAGCCCAGTCAGCTGAGCTCAGCTGTATCATTGCTGGATTACTACTGCCACAAGAATGACTGGTCTCTGCCGGAGTATCACCTCTACTCCCTTGCCGGACAGGAGGGCAAAGTAATGCTAATCTATAAAGTGGTCATCAGCAGCACCAGACGAAGCTTCATGCCTGATAAAGTCTGCACTATACTCGAGGATGCCAAGGAGCTTGCAGCTCAGAACGCACTCTGGAACTTAGATTGCTCCTCTGGCTCCTCATTGAATGTTTCTCCTCCTGCACCTTCTGGCTCTGGGTTCCTGTCCTTTGGCTGCAGGTCTCTGCCCTACCCAGCGTACCCCATGGCCTCAATCTCACCCCCCCTGCCCATCTCCTGCTCCTCTGCCCAGAGACTCTTCATCCCCAACCAGTCTTCATTCCTTTAGTCAAGAAGTTACTTTACTTACAGCGTGTTTCTTAACGTTCATATGAGTCGTTTTAATTGTTTCACAGACTGTTTCTGATTTAATGCTGTTTCAGTAGAATAACGTTTCCTCTGTTGCGCTAACTTACTTCAAGCCAGGGTTGTTGTTTCTTTACCAGAGTATTTTAAGGATTCTGTTTGAGCATTTATTTCGCTTTTTAATTCTTAAGAAGTAAGTTATTTACTCGCATTAGAAACAGTGTTTGAATGGAAACAACAAATATAAACTGTAACACTGCTAAAATGGCCAACCACTGGATCGTCTTTATGCAGTTGTGTAACATTTCTCTGGCAGATTAAATCTTCATAATTTAAGTTAGAtggttttgcttttttgttgttgttgagcaTTTGCCCTTGACTTGAATACCtacaactagggctgcacaatatatcgtttcagcatcgaaatcgcaatgtgcgcatctgcaatagtcacattgcaaaggTATGCAGAGtgcagtctgaattatagttgaccaggagctacagaattatATTTAATCACggaatcactgtatttatatggacgtcatatgatttatgcaaaaaaaaacattttttacttagattttttgtattgtttctagtccaaatatctaatttCATAGCAAAAACAAGAATATttcacttaccccactg

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-061013-298 Predicted to enable mRNA binding activity. Predicted to be active in nucleus. Orthologous to human RBM46 (RNA binding motif protein 46).

Ensembl:

ensembl_id ENSDART00000187740

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000233 lncRNA upstream 73796 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00002811 lncRNA upstream 177226 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000220 lncRNA upstream 214469 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00000214 lncRNA upstream 843748 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000210 lncRNA upstream 967624 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003034 lncRNA downstream 324268 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00002812 lncRNA downstream 479748 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00003035 lncRNA downstream 507488 10645264 ~ 10668028 (+) True XLOC_000137
TCONS_00003036 lncRNA downstream 507588 10645364 ~ 10680841 (+) True XLOC_000138
TCONS_00000251 lncRNA downstream 524536 10662312 ~ 10663525 (+) True XLOC_000139
TCONS_00000239 mRNA upstream 4907 10118455 ~ 10124192 (+) True XLOC_000127
TCONS_00000238 mRNA upstream 10070 10110217 ~ 10119029 (+) False XLOC_000127
TCONS_00000234 mRNA upstream 15083 10074343 ~ 10114016 (+) False XLOC_000127
TCONS_00000242 mRNA downstream 83792 10221568 ~ 10235337 (+) True XLOC_000129
TCONS_00000243 mRNA downstream 159251 10297027 ~ 10304044 (+) True XLOC_000130
TCONS_00000244 mRNA downstream 167835 10305611 ~ 10315206 (+) True XLOC_000131
TCONS_00000246 mRNA downstream 180313 10318089 ~ 10325025 (+) True XLOC_000132
TCONS_00000248 mRNA downstream 240930 10378706 ~ 10448524 (+) False XLOC_000134
TCONS_00000236 other upstream 41574 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000231 other upstream 71042 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other upstream 71291 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000230 other upstream 74328 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000213 other upstream 907483 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000245 other downstream 180301 10318077 ~ 10323272 (+) False XLOC_000132
TCONS_00000247 other downstream 225944 10363720 ~ 10363851 (+) True XLOC_000133
TCONS_00000253 other downstream 546219 10683995 ~ 10696328 (+) True XLOC_000140
TCONS_00000258 other downstream 1242721 11380497 ~ 11380611 (+) True XLOC_000145
TCONS_00000259 other downstream 1331760 11469536 ~ 11469650 (+) True XLOC_000146

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00015988 True 261 mRNA 0.62 2 CM030132.1 32576870 ~ 32577223 (+)