Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000205 |
| length | 1721 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 2 |
| gene id | XLOC_000110 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 9082417 ~ 9091935 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051968 | positive regulation of synaptic transmission, glutamatergic | biological_process |
| GO:0019226 | transmission of nerve impulse | biological_process |
| GO:0034765 | regulation of ion transmembrane transport | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0098943 | neurotransmitter receptor transport, postsynaptic endosome to lysosome | biological_process |
| GO:0098970 | postsynaptic neurotransmitter receptor diffusion trapping | biological_process |
| GO:2000311 | regulation of AMPA receptor activity | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0099590 | neurotransmitter receptor internalization | biological_process |
| GO:0098839 | postsynaptic density membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0032281 | AMPA glutamate receptor complex | cellular_component |
| GO:0005244 | voltage-gated ion channel activity | molecular_function |
| GO:0005245 | voltage-gated calcium channel activity | molecular_function |
| GO:0016247 | channel regulator activity | molecular_function |
| GO:0005262 | calcium channel activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090312-124 | Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy and macular degeneration. Orthologous to human CACNG3 (calcium voltage-gated channel auxiliary subunit gamma 3). |
| ensembl_id | ENSDART00000055023 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003031 | lncRNA | upstream | 110520 | 8967479 ~ 8976422 (+) | True | XLOC_000106 |
| TCONS_00003029 | lncRNA | upstream | 121003 | 8950874 ~ 8965939 (+) | False | XLOC_000105 |
| TCONS_00000198 | lncRNA | upstream | 121003 | 8950874 ~ 8965939 (+) | False | XLOC_000105 |
| TCONS_00003030 | lncRNA | upstream | 121003 | 8961004 ~ 8965939 (+) | True | XLOC_000105 |
| TCONS_00000197 | lncRNA | upstream | 387831 | 8694291 ~ 8699111 (+) | True | XLOC_000104 |
| TCONS_00003032 | lncRNA | downstream | 37451 | 9129386 ~ 9132490 (+) | True | XLOC_000111 |
| TCONS_00003033 | lncRNA | downstream | 62159 | 9154094 ~ 9155521 (+) | False | XLOC_000113 |
| TCONS_00000210 | lncRNA | downstream | 65441 | 9157376 ~ 9161475 (+) | True | XLOC_000113 |
| TCONS_00000214 | lncRNA | downstream | 185911 | 9277846 ~ 9285351 (+) | True | XLOC_000116 |
| TCONS_00000220 | lncRNA | downstream | 795020 | 9886955 ~ 9914630 (+) | False | XLOC_000120 |
| TCONS_00000203 | mRNA | upstream | 12463 | 9071324 ~ 9074479 (+) | True | XLOC_000109 |
| TCONS_00000201 | mRNA | upstream | 22030 | 9004719 ~ 9064912 (+) | False | XLOC_000108 |
| TCONS_00000202 | mRNA | upstream | 42595 | 9004752 ~ 9044347 (+) | True | XLOC_000108 |
| TCONS_00000199 | mRNA | upstream | 98438 | 8984068 ~ 8988504 (+) | False | XLOC_000107 |
| TCONS_00000206 | mRNA | downstream | 53023 | 9144958 ~ 9145896 (+) | True | XLOC_000112 |
| TCONS_00000207 | mRNA | downstream | 61206 | 9153141 ~ 9161843 (+) | False | XLOC_000113 |
| TCONS_00000211 | mRNA | downstream | 107096 | 9199031 ~ 9227204 (+) | False | XLOC_000114 |
| TCONS_00000212 | mRNA | downstream | 107214 | 9199149 ~ 9206616 (+) | True | XLOC_000114 |
| TCONS_00000215 | mRNA | downstream | 198168 | 9290103 ~ 9294115 (+) | True | XLOC_000117 |
| TCONS_00000154 | other | upstream | 2022999 | 7063837 ~ 7063943 (+) | True | XLOC_000081 |
| TCONS_00000149 | other | upstream | 2299138 | 6787690 ~ 6787804 (+) | True | XLOC_000078 |
| TCONS_00000134 | other | upstream | 2901410 | 6182342 ~ 6185532 (+) | False | XLOC_000067 |
| TCONS_00000123 | other | upstream | 3584858 | 5497285 ~ 5502084 (+) | True | XLOC_000062 |
| TCONS_00000121 | other | upstream | 3636498 | 5438743 ~ 5450444 (+) | False | XLOC_000062 |
| TCONS_00000208 | other | downstream | 62159 | 9154094 ~ 9155273 (+) | False | XLOC_000113 |
| TCONS_00000209 | other | downstream | 63058 | 9154993 ~ 9155521 (+) | False | XLOC_000113 |
| TCONS_00000213 | other | downstream | 126713 | 9218648 ~ 9221616 (+) | True | XLOC_000115 |
| TCONS_00000230 | other | downstream | 959839 | 10051774 ~ 10054771 (+) | False | XLOC_000126 |
| TCONS_00000231 | other | downstream | 959849 | 10051784 ~ 10058057 (+) | False | XLOC_000126 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000300_00740073_00744573.mRNA | True | 3861 | mRNA | 0.39 | 3 | CI01000300 | 739096 ~ 746407 (+) |
