G329334


Basic Information

Item Value
gene id G329334
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3301668 ~ 3302096 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU374354
TGTTTCCCCCCATATTTACATGTATTTATACTAAATTTAGCTAATAATAGAAGTAGCAGATCACTTGAATAATATTCATCATGATAGGACATGTCATAAGTGGGAAAAACACAGCTGAAAGCTGAAAATTATGTGATCCTGAACAGAAATCTGACCAAAAAAAAAAAAAAAAAAGCTGAGTGAGGACAGCTCAATGAAAGCATATTCTGCATGTAAACCACAAAATGTACAAAATATATCAATATCACAATTAAATCTGTTTACAAGATAGTAATTGCAAGGGTAATGTTTATAAATGAATTTAAAAGAACAGAGAAACAATACACATAGTGTTATAATAAAGACAACATTTTGTATTTGTCAAAGTAACTGAATTTGGCTTCCTAGATTAAAAAACAAAAACCTATATACATATCGATATTATGAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU374354 True 429 lncRNA 0.28 1 3301668 3302096

Neighbor

gene id symbol gene type direction distance location
CI01000112_03285278_03286531 STK19 coding upstream 15100 3284558 ~ 3286568 (+)
CI01000112_03234159_03240113 MHC1ZDA, MHC1ZBA coding upstream 61555 3233045 ~ 3240113 (+)
CI01000112_03192658_03204707 MHC1ZBA coding upstream 96636 3191661 ~ 3205032 (+)
CI01000112_03112349_03117520 NA coding upstream 184081 3112349 ~ 3117587 (+)
CI01000112_03100235_03105799 USH1G, USH1GA coding upstream 195395 3099448 ~ 3106273 (+)
CI01000112_03344466_03359943 CYTH3, CYTH3A coding downstream 42370 3344466 ~ 3360296 (+)
CI01000112_03571702_03574425 NA coding downstream 269284 3571380 ~ 3574700 (+)
CI01000112_03608324_03621681 NA coding downstream 306228 3608324 ~ 3621688 (+)
CI01000112_03653384_03730444 NA coding downstream 351288 3653384 ~ 3730448 (+)
CI01000112_03759872_03772553 AXIN2 coding downstream 457707 3759803 ~ 3772982 (+)
G329340 NA non-coding upstream 25782 3275564 ~ 3275886 (+)
G329354 NA non-coding upstream 82995 3218414 ~ 3218673 (+)
G329307 NA non-coding upstream 89837 3210141 ~ 3211831 (+)
G329277 NA non-coding upstream 203372 3097920 ~ 3098296 (+)
G329276 NA non-coding upstream 228939 3067831 ~ 3072729 (+)
G329296 NA non-coding downstream 83 3302179 ~ 3305395 (+)
G329339 NA non-coding downstream 4492 3306588 ~ 3306879 (+)
G329373 NA non-coding downstream 74185 3376281 ~ 3384378 (+)
G329380 NA non-coding downstream 85061 3387157 ~ 3387370 (+)
G329381 NA non-coding downstream 86154 3388250 ~ 3388451 (+)
G329194 NA other upstream 369779 2920254 ~ 2931889 (+)
G329125 NA other upstream 683517 2617704 ~ 2618151 (+)
G328456 NA other upstream 2068550 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 1782624 5076817 ~ 5101845 (+)

Expression


Co-expression Network