G329276


Basic Information

Item Value
gene id G329276
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3067831 ~ 3072729 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU374289
TGTAAAATGTAATGTACATCTTTCATTACAAAAAGGTATAGTAAAATAAACAACAATCTTTAAAATGCAATCTGAGTTCGAACAGCACACAAGAAAACCTCGGCAGGGTCTCGAAGGCCTGACGCCTGGATGAGCAACCAGCTTTAAGTGATGGTTGGGAGGCAAGAGATCCTGCAGAACTGTGTCAAGATTGTAAGGAAATTACCCAGATCTACACACCAGCTCAGTCCTTGAGTGTATCGACTGGCTTCTTTATGCATTCGTTACAGCACTGCAATGGAGTTCACTAATCAACTGAATATTTTGGCATGTTTATGCCTCCCATCTAAATGTGCACAGCTGCATTGCTATATGGTCCACATCAATATTTGATCAACATAAATTCCCAAGTGCAAATCCCCACTAAAATGTTCCTTTATTCTCAGAAGAAAAATACACAGTGTGAAAGTCACAAAAGTTTGCATCATAGTCAAGCCGTTATTGCTTACAATGAATACTTTTGTGCTCTAGTTAGTCAGAGAGCTTACAGTACCAGGGCATGTTTTCCATCCAATGACATATCAACATAACATGAGCTCTAGGAGAGAGATCTAGAAAGTAGGAACAGGTTTGAATGAGGATGGAGATGAAGAAGTTTTACCCTGTCGCTACGGGGTTTTGTGGGTCCCTGAAAGTCATCTGTGCTTGGACTGAGCTCGGCTCTGTAAGCTATGGAAATGGGCTTCCCTCAGGACGCGGTTGATGTGCTGGTAGGACAGCAGGTCCTGCTTGGAGGCACTGTGGGGACTGCAGGGGCCGGGGATGCCGTGGGGCCCGATGACGTCCACTCCACAATGGCTGCTGCCGCTGCTGCTGCCGGCGACGTGATCAGGACTGCTGATCCAGCTGCTCTCGCTGCTGGAAGACTCAGACTCCCATGATTCCCTGCCCGTCTCAGAGCTCTGGAGGGCTGAACTCAGCCTTTTTGCCTGAGGCATCTGAGCATCTTCATCATCGCCTTCAGCGCGCTGACGTTTCCTGTTTTCTGTAAGCATTTCTGTGAATGGTGATGATGGTCTTGTATGTTTGAGTGTTTTATTGAGCTCCTGGTTCAGCTCTTGTCACTCTGATCAACCGCCTGCTGTGTCATGCTACACTCACACCTCTGCTAACAGCTTAACACGCACATAAACACGACATGTTCAACTCAAAGCGGCTCTATAAAGTATAAATCAGAAAATTACATGTAAGAAAACAAGTGAAGGTCGTATTTGATTAATTCTGCCGTAATAAATGTGTCAAACTCAAACTCATCCGGCTAGTCTCTATCATAGCTGTGTGCTAACTGACACTTCACTAGTTGTAAAAACACGCGGTATATTCTACTCGTTTAACGCTGTATTCTTATTGCAGTCGTACTTTCGTAAACGTAGCAGATATAATAAGGTTCTCTGTGAATATAAGCCGGCTATTTGTCTATTTGATGAGCCTGCGCGACACAAAACAAACCGCCGCTGCTGTTATTTAC
>TU374291
TCTGCTATTCTTTTATATTTAGAAAGATTTACAGAACTAAATCTTTTTGGTTATCATTATAGTTACCATCCTTGGTGTGAACAGGCCTTTAAAAGAGCACAAAATTTAAATCTGCAGGACTGCAATAAAGTAGAACAGACTGCATGTCATATTATGACCGTCGCAGTGTCTGTAGAAATGTTGCTACTCAAAGTCTAGTGTGACCGCGGCTTGATGACGAGTTGTTGAGTGCATGTCATACCTCAGACTCCCATGATTCCCTGCCCGTCTCAGAGCTCTGGAGGGCTGAACTCAGCCTTTTTGCCTGAGGCATCTGAGCATCTTCATCATCGCCTTCAGCGCGCTGACGTTTTGTTTTCTGTAAGCATTTCTGTGAATGGTGATGATGGTCTTGTATGTTTGAGTGTTTTATTGAGCTCCTGGTTCAGCTCTTGTCACTCTGATCAACCGCCTGCTGTGTCATGCTACACTCACACCTCTGCTAACAGCTTAACACGCACATAAACACGACATGTTCAACTCAAAGCGGCTCTATAAAGTATAAATCAGAAAATTACATGTAAGAAAACAAGTGAAGGTCGTATTTGATTAATTCTGCCGTAATAAATGTGTCAAACTCAAACTCATCCGGCTAGTCTCTATCATAGCTGTGTGCTAACTGACACTTCACTAGTTGTAAAAACACGCGGTATATTCTACTCGTTTAACGCTGTATTCTTATTGCAGTCGTACTTTCGTAAACGTAGCAGATATAATAAGGTTCTCTGTGAATATAAGCCGGCTATTTGTCTATTTGATGAGCCTGCGCGACACAAAACAAACCGCCGCTGCTGTTATTTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU374289 False 1507 lncRNA 0.45 3 3067831 3072729
TU374291 True 841 lncRNA 0.41 2 3071571 3072729

Neighbor

gene id symbol gene type direction distance location
CI01000112_02992698_02995752 NA coding upstream 71168 2989821 ~ 2996663 (+)
CI01000112_02774549_02777028 SOCS3, SOCS3A coding upstream 289200 2773456 ~ 2778631 (+)
CI01000112_02740099_02758394 CYTH1, CYTH1A, CYH1 coding upstream 309437 2740099 ~ 2758394 (+)
CI01000112_02659891_02661832 NA coding upstream 405816 2659891 ~ 2662015 (+)
CI01000112_02585528_02607525 USP36 coding upstream 460163 2584929 ~ 2607668 (+)
CI01000112_03085161_03094204 HID1 coding downstream 12432 3085161 ~ 3094406 (+)
CI01000112_03100235_03105799 USH1G, USH1GA coding downstream 26719 3099448 ~ 3106273 (+)
CI01000112_03112349_03117520 NA coding downstream 39620 3112349 ~ 3117587 (+)
CI01000112_03192658_03204707 MHC1ZBA coding downstream 118932 3191661 ~ 3205032 (+)
CI01000112_03234159_03240113 MHC1ZDA, MHC1ZBA coding downstream 160316 3233045 ~ 3240113 (+)
G329195 NA non-coding upstream 18838 3027017 ~ 3048993 (+)
G329197 NA non-coding upstream 118667 2946342 ~ 2949164 (+)
G329192 NA non-coding upstream 136945 2927424 ~ 2930886 (+)
G329190 NA non-coding upstream 149663 2917949 ~ 2918168 (+)
G329184 NA non-coding upstream 166429 2901186 ~ 2901402 (+)
G329277 NA non-coding downstream 25191 3097920 ~ 3098296 (+)
G329307 NA non-coding downstream 137412 3210141 ~ 3211831 (+)
G329354 NA non-coding downstream 145685 3218414 ~ 3218673 (+)
G329340 NA non-coding downstream 202835 3275564 ~ 3275886 (+)
G329334 NA non-coding downstream 228939 3301668 ~ 3302096 (+)
G329194 NA other upstream 135942 2920254 ~ 2931889 (+)
G329125 NA other upstream 449680 2617704 ~ 2618151 (+)
G328456 NA other upstream 1834713 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 2011991 5076817 ~ 5101845 (+)

Expression


Co-expression Network