CI01000112_02585528_02607525 (USP36)


Basic Information

Item Value
gene id CI01000112_02585528_02607525
gene name USP36
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2584929 ~ 2607668 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_02585528_02607525.mRNA
GTATTTATGCAAGTATCGTTCCTGACCATTTGTTAGCCCTCTCCGTTTCTGTTACATCGACTTCTGTTCATTCTCAAATGCAGTCTCAGCAGTACCTGATGGGTGTGCGCTTTTGCCTAGTAGCAGCACAGTTGCTGTTATGTAACTAGACACCTGCCACATCCTAACTGTTCACCTATTGGACACAATGTTTGGATGTTGCATTTCATGTAGCCTTGTGCAAGTTATTATCTGTCAAGGCAGACGAAAGCTCTGTTAATGCAGTCTTGTGATTTGTGGGTAAATGACATGTTGTGTTACTGATACTTTGATTGGTTTGAGCACATGTACAGGCTCCTGTTTTTCAAATGCAGCTTGCTTGGTTTGCCAGATTGACATAAGGTTGTGATATCTACTGAAATGACTTGCTTGTCATGCGTCAGATTTGTTGATCTGGATGAACTTTATGCTTTCAGCTTTGAAGAATGGAAAATCTTTGGTTTATTACAAGTTATACTGAAACTTCTAACCAAGTAATGCATGTTTGAAAGTTTTAAAATTGAAGCAGTTTTTCTAATTTTTTTTTTTTTAAATCTGTTTTTCCTCATCAGTGACACATAATGCCGATAGTGGACAAGCTCAAAGAGGCCCTGAAGCCGGGCCGCAAGGACTCCAGCGATGAGGGCGACCTCAACAAGTTGCTGGCATCATCTGCCAAGAAAGTGCTGCTGCAGAAAATCGAGTTTGAACCAGCCAGCAAAGGCTTCAGCTACCAGCTGGAAAACCTCAAAACGAAATATGTGATCCTGAATCCCAAGAATGATGGGGCAGCAGCACAGAGACCATCTGAACCTGCTCAGATTAAGAGACAAATATCTGAGAGCCTGAGCATTGGGCAGAGCGATGGGATCCCTGCCCCGCAGAAGATGCTCTTCCCTGGGAACAAGCTGTCCATGAAGTGGGAGCGGGTGTATCGTGTTGGAGCCGGACTCCACAACCTGGGCAACACCTGCTTCCTCAACTCCACTGTGCAGTGTCTCACCTACACCCCACCGCTGGCCAACTACCTCCTCTCAAAGGAGCACAGCCGATCCTGTCACCAATCAGGATTCTGCATGATTTGCGTAATGCAGAACCACATCATCCAAGCCTTTGCCAACACGGGCAATGCCATCAAACCTGTATCATTCATCCGAGATCTGAAAAAAATTGCTCGCCATTTTCGATTTGGGAGCCAAGAGGATGCTCACGAGTTTCTGCGTTACACCATCGATGCCATGCAGAAAGCTTGTTTGAACGGATATCCCAAAGGAGTAACGCGCCCTTTTATTCACAGGCTGGACAGACAGACACAGGCCACCACGCTGGTCCACCAGATTTTTGGGGGTTATTTGAGGTCAAGAGTAAAGTGTTCTGTTTGTAAAAGTGTGTCAGATACCTATGACCCATACCTGGACATCGCTCTGGAGATTCGGCAAGCGGCCAACATCGTTCGTGCTCTGGAACTATTTGTCAAGCCTGATGTTTTGAGTGGCGAGAATGCCTACATGTGTGCCAAATGTAAGAAGAAAGTTCCAGCTTCTAAGCGGTTCACAGTTCACAGAACATCAAATGTGCTGACACTGTCACTTAAACGATTCGCCAACTTCAGTGGAGGGAAAATTACCAAGGATGTCGGCTACCCAGAGTTCCTGAACATTCGTCCATACATGTCCCAGAGCACTGGAGATCCTGTCATGTACGGCCTCTATGCTGTGCTTGTGCACTCGGGCTACAGCTGCCATGCTGGACACTACTACTGCTATGTCAAGGCCAGTAATGGGCAGTGGTACCAGATGAATGACTCAATGGTGCATTCCAGTAACATCAAGGTTGTCCTTAATCAGCAGGCTTATGTCCTCTTTTACCTGAGGATCCCTGAAAAGAAAAATACAGATGCTTCAAATATAAAGCAGAACATGGTGCACTCTGGCAGAACTAACATGACACCGGAGCAGCTGAAGAAGAGCACATTCAATGGACCTTTGTCTTCGCCACAGGTTGCAAAGAAGCTTGATCCCGCTCAGCTGAGAAAAATCCAGTCTGTGGATGGAGGGCTTGGTATTCCAGTAGCCAGGAACTGTTCAGGGGTCCAATCGCCGAAGATGTCTAATGGTACAGGCACGTCTCATGCCCTGCCCAAGCCGCCCAGTGGACCCACACTGATCGAGGAGTCCTTTAAGAAAGTGAAGAAGCCCATACCTCAGCCTCAGTCCCGCAGCAGCACCCCTGCTCCATCCAACGGCCTCCCCAAACCCGACACCGACAAGAGGAGCAACAGCGAGGGCCGTGGCCTGCCATCATCTACCTCACTCAAATCCCTGTCTGACAGCTCCTCAGCAGACACCTCCTCCGACTCTAAAGAGTCTATTGGCACGAGGAGCGCGCCTGTTGGCGACACGTCTAGTGTGAACGCTGCATCATCTCCAGCTAAGAGCATGGAGCGCGTTAACTCAGAGGAGCAGAAGGTGGTGAAGCTCAAACCCCAGGCCCTCACCAATGTCACATCAGAGGCCGTCAGCACCATGTCGCCCCCGCCCGCCAAACGACTCGCCCTGTCCGCCAAGAAGTCTCCACCTTCAACTCGCCTTCCTAAAGTTTCAAGTCCCCTTAAACAGCCCTCCTCCACTCTGGAGCCGCCCGCTCATGCTCTCTCCACACAGACCAATGGCATTCAGCCTCAGCCGCCCCGTACACCCAGACCGATCCAGAGCCAGATCATGTCAGCCTCAACTACAGGACTTCCCCAGGAACTCGCCAGTCCCACGCTAAAAAAGAAGAAAAAGAAACTAAAACGCCGACATTCGGAAGTAGAGCAGGACGCCCCTAAAGCCTCACCCCCAGAAGAACCAAAGCCAAGTACTGAACACAGGCAGAAGAAAAGGAAGAAGAAGAGGAAACGTGAGCAGGAGGCAGATGGTCTTGAGGTCCAGAGGGAGAGCGTGCAATCCCATCTTGAGCCCCATCAAGATGAGGACTGGTGTCTTGGAGAAACTTGGAGCCTCATCTCAGAAGCCAAGGGAAATAAGATTGAGTCATCTAAAGCAGCAGAGAATTGTCAGACCAAACCTCAGTCAGTGCCTCCAGTTGGCCGGCCAGCAGCAGACCCCGTCCCCAAAAAGAAAAAGAAGCACAAACACGTGGAGCAGCTGGAAGAGCTCAGAAATGGAGCCACAGTTTCAAAGTGGGAGCTTCAAGAGACCAATGGAGACGAGTCTCCTAGTCCGATGGGAAACCCGGATATGCAGAAACCTAGTAAACTGAATACAGCTGCAGTGATTGTTTGGGACAGCCAGGTTCAGGACGGCTACAAGCGCAAGCAGAACCATCAGGAAGCGGAGGGCGTGTCGAGGAAAGGCCCGTGCTTCGCCCCTAAGGGCTGGGATGGCAAGAAAAGCTGTGATGTTGTCGAGGAGCTCCTCAAGAACTCCTCAGATAAAGCCTATGGAACTGAGGTTCTCAGTTGGGATGGAGATCCGTCGGCCATCAGCAGAGACGCCATAGAGGATGTACGCTATGCCAAAAACGATACTGTCCTTGACGAGTGGGACAGGGAGTTTGATAGTGGAAAAGTGAAGAAAATGAAAAAATACAAAAAGGAGAAGAGGAGGAATGGAAACGTCTTCCAGAAAATCCAAGAGCATCGTAACATGTGGTCGGTCACGCCGGGAGGCAGGAGGAGCAGTTTGGGCTATCGCCATTGAAAGGTGCTTGGGCGTGTTTTTGTTTCTCAGTTCAAAATTTATCTATGCCAGGTTACAAAAGTATTAAACAATTATCCATCCTTTCTATCATCATACTTTGAAATTGTATACTAATGTTCATTAACATGCATTGTTCCTATCAA

Function

symbol description
usp36 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP36 (ubiquitin specific peptidase 36).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process

KEGG:

id description
K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_02585528_02607525.mRNA True 3865 mRNA 0.49 18 2584929 2607668

Neighbor

gene id symbol gene type direction distance location
CI01000112_02565726_02573879 TIMP2B coding upstream 10823 2565508 ~ 2574106 (+)
CI01000112_02541564_02549213 NA coding upstream 35485 2540950 ~ 2549444 (+)
CI01000112_02532994_02538052 NA coding upstream 46804 2530024 ~ 2538125 (+)
CI01000112_02503439_02516455 LGALS3BPA, LGALS3BPB coding upstream 68293 2502872 ~ 2516636 (+)
CI01000112_02483013_02484955 LGALS3BPA coding upstream 99796 2483013 ~ 2485133 (+)
CI01000112_02659891_02661832 NA coding downstream 52223 2659891 ~ 2662015 (+)
CI01000112_02740099_02758394 CYTH1, CYTH1A, CYH1 coding downstream 132431 2740099 ~ 2758394 (+)
CI01000112_02774549_02777028 SOCS3, SOCS3A coding downstream 165788 2773456 ~ 2778631 (+)
CI01000112_02992698_02995752 NA coding downstream 382153 2989821 ~ 2996663 (+)
CI01000112_03085161_03094204 HID1 coding downstream 477493 3085161 ~ 3094406 (+)
G329098 NA non-coding upstream 42632 2541667 ~ 2542297 (+)
G329067 NA non-coding upstream 159731 2423842 ~ 2425198 (+)
G329080 NA non-coding upstream 172216 2412411 ~ 2412713 (+)
G329079 NA non-coding upstream 174209 2410495 ~ 2410720 (+)
G329025 NA non-coding upstream 302019 2282689 ~ 2282910 (+)
G329097 NA non-coding downstream 42706 2650374 ~ 2653361 (+)
G329145 NA non-coding downstream 164833 2772501 ~ 2772741 (+)
G329151 NA non-coding downstream 177372 2785040 ~ 2785269 (+)
G329153 NA non-coding downstream 180759 2788427 ~ 2788857 (+)
G329101 NA non-coding downstream 255417 2863085 ~ 2868729 (+)
G328456 NA other upstream 1351811 1232022 ~ 1233118 (+)
G329125 NA other downstream 10036 2617704 ~ 2618151 (+)
G329194 NA other downstream 312586 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 2477052 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026843 usp36 coding NC_007114.7 CM002887.2 57583656 ~ 57630791 (-)
bowfin (Amia calva) AMCG00013225 usp36,LOC107717487,LOC104948677 coding CM030125.1 CM030125.1 25231148 ~ 25255201 (+)