CI01000112_02992698_02995752


Basic Information

Item Value
gene id CI01000112_02992698_02995752
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2989821 ~ 2996663 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_02992698_02995752.mRNA
ATATAAAGAGCCGCCCACAGCTGCGTCAGCCCATCTCCCTACAATCCAATCTGCGCTCCTTTCCCATGATGCTTCCCATTGGCACAACGGAGAGAAAATCCGATTTCATCCCCCACAGGGCCTGTGCAGCGGTGCTGATATGGAAAATGATTTCAGAGAGCTACTCAGACCCATAAAGCTTATTTCAGGCTCTTTGACTAATGAGACACACTTTTTCTCACTACATTAAAAGTACAGGTATTTCAGTCTGAATTCAACACTGATATAAAAATAACACTAACAGTCCTTCTACAGTATACCGAGCAGGTGGTACAAAATATCTGGCATGTCTCAAAATCTTAAATCTGTGCATTTGGTCTTGCATTGTAAATACAGTTTGATAGACCTGCCATTGTCTACTTATAACCACTTCTGTCCTGATTTCTTTGAGGAGAGGGTTTATGGGCGGGTAAACGTATGGGTTTTTTCAGATCTTTCAATCTAATGGACATGTATAGACCTGCCATTGTCTATACATTAATAAAACAACATTATGACAAGGGAAAAACAAATAGTGCTCTTAATTTAATTCTGTTATTAACAAAGAAATAAATCTGATACCTGCATAGTTTTGCTACATTATCAAAATAATATTAAAATTTCACATTTTGGTAGTATTACTGGATATTAGACTGCATACTATTGCATATGTACAATATCTTTACATGATCAAAGTAGGGGAAATTTATAGCAATTACACATATTTATATATAGTCTCTATGGTCCTGTTGACCCCTAATATTAACATTCATCCTCATGTGATCCAATCACAAGTGGTCAACGGAGGCCCTGTTTACCCCTACGTTTTGGTCGATCGGATCACAAGTGGACGAGGGAGACACATTTTGACCACTTATAACCACTTCTGTCCTGATTTCTTTGAGGAGAGGGTTTATGGGCGGGTAAACGTATGGGTTTTTTCAGATCTTTCAATCTAATGGACAAAATAAGCTTGCGTAATTTACATATGAACGCGACCGGAGATGGTGGAAAAACACAGAGAGCAGCAGCTTTCGTTTCTGCTCTGAAAGCCACAAGACTACAACGAACACTGAGAGTGTTTGTTAGAAATCAGGAATGGTGAGAGAACATTGTGCTTGGTATGTTTTTCATCTTTAAACCAAACTTGGGTCTTCAGCCGACAGTTTAAATCCTGTCTGGCTAGCACGCTTCCCATATTAGTGGGGTCAGTTGGCGGAAAGGACTTCCAATAAAACTAGGGCTGCCCCCTAATAGTTGACTAACCGTTAGTCGACGAGAAGAAGCTTAGTTGACCAAAATGTTATTAGTCGCAGGGAAAAAAATCCACATGAAGTGGTTAAGTCACACAGTCTGTGACAGACAGATCATTAATAGCTGGTCTATGTGGTAATTACAGTACATCGGGCAGAACATTCAAATGCTCGCCTGTCATTCATCGACCTTAAATATGGCTTGTCATCTGAAACATGTAAGTAGTAGCAACTTTACATAGCTGATCACTTTAACGTTAACCTAGAAAAATGTGGGCTATTCAAGTGTTTGTGCGGCATGTGAAAGCTGAATAATAGCACACCTACTGCATGAAAGCTAACATGGGGGCGCCAGTGCGATCACTTGCACTTAAAATACTCCATCATTTTTGGTCATGCAGATAAGAGTAATATATCTTTTGAATCTGTAAAGAGTCTACTTTTATTTGAGTGTACTCACAATAACAGCAAAACGTTGTGCTTTTGTAAAATAATGAAAGCAAACAGTGAGCTTTCTGCCGTCTCTCCCTGTGAACTTGAGCGCGCCAAAGAGAAAGAACCGAAACTCCATGTAGCCTAAACTTGCCCATATGAAAAATATATCTATAGAAAGTGAAATGTCTACTTTTAAATGAACCAATTCAAATGGAAAACAAATATTCTCAGGTTATGTAGTCCGTATGAAACGTGCATATAGGACGTTTTGGAAATTCAACTGAACACCCTAGATATAATACATACAACCAAATCACAAGAAAAGGCACAGTTAGCAGAGATATTCGAGACTTCTTGGAGGTGAAAACTATCCCAGAGCAAGATTTTGGTGGTGTGAGGATAAGTGTGTTATACTTGGGTAAAAGAAATGGTAAGACCCTCATGCTCATCCTAAAAAAAAAAATCATAGCTCTGGTGGACAGAGATGAACAGTGTAAACTAACTAACTACAGTCAGGCATGTTTCTCACAGACATGCCTTTAAGCTGGATGCTGCATGGCTGTAGTGCAGTGTAGGTGGTGTGGGATCTCAGTTGGGGATCCAAGAACACAGAGATCTATGTGTCTCTGATCCATTGTTAAGAGCTGCCATCTGTTTGAACTGAGCTGAGCTTGAGTCATCGTGTTCAATACTGAAAGAGCTCCCATATCCAGCCACTTATTCCACCCAAACGGGATTTCACATGACTAGTTTGGAAAAAGCACGGGGAATTTTAACGGATCTGGTTTGTTTCGGTCGCTGTTGCTCAATCCATTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGATTAAAGTCATGTTTAGAGGGCCAGAGTTTCTGGAGTAGAGGTACAGCAACTGTGTGGGAGCCCCTCGGAAAAACTGTTACTGTTTTTCTCAGTTGACTCTTCTAAACTGAGTTTAATTGGAAAATAGACGGTAGTAGTGTAATGTCCAGATTGCATACTTATTTCTCTTCCAATAAATCGACCACATAATCAAAATGTGTGTGAGAAAAGTGCAGTGTAGTACATGTGTGTGTAACTCAAGACTTTGACTACATACACTGACGCCACTCTGGAGGCTGTTAAAGTGTGCAAGTGTGTTTTAAGAGGGCTTCAAACCCATGGCCCACACATTTGCCCTCGCCACATCAAAGGTCCCCCCTGCAGTCAAAAACTGGGTGGTCTTTTTCAGCTGTGTAGCCAATAAGCGCAAGAAAACAGTACACCCTGCCTCTATCTTTTCTCCTCTACACATTATCTTGAGATCAACTAAAGGTCAACCAGCTCACACAGCCGACTCTGAACATAAGCTGCATCTGCCAGAACCTGCCTTAAACTTGAGTTATGCTGCCTATAGACAGATGCTGGTCATCCATGGAATGCTACACCAGAGTCTGTTTAACATCTGCCTTAGCTGGGCCTTCAATGGGGGGCAGTTGTTATCGTATGTTTGTATAGAGTTTCTTTTTGAGAATGGACAGATTTCGATGTCCTTTGAGACAGTGACAAATCAATACACAGATGCTGTACATCTGGACTCTGTGCTTAAGAACAGAGGATGCTACTGCAATCAAAGCATCAACATTTGAAAAACAACACAAACACACTTTAGCTGCTTTTCCACCGTGGGGCCGAATGGTTCTTTAAATGGTAAGGAATGGTTCCAGTTGTGTTTCCACTGGAGCCTGGTACGGCATGGCACGATTACAAACCGTTCTCGGCCCAGAATTCTCAGCATGGTTGTCTAACCTTGCTGAATCGTGCTGGTAGAATACGTGAAGTGACGTTGCCACACTTCGGTCACTTGTCTGTTGCCTGGCTATATTTGAGCGATATAAACAAAAATTAATAATAAAATTAAAAGAAATACCTGATCATCCTCCATAACGCAGTCATTATTTACATTTCATATCATCAGTAAACCTTTGCATTACCAAGGCAATGACTGACACTTTTATATTACATTCCAAAGAGCAGCCGTTATCAGCCCCTCAGTGGAAAATGAAACCGTAACCGTACCAGCAGGCCCAGATCGGCATGCCATGGAATGGAATGGTTACACAATGAGAACCGTTTGGTTCGATGGTGGAAAAGCAGCTTTTGTCCAAGCGACCAGTCCCACATAGCAATTGTTGTCAGGCCCAGTTCAGGGCTGGTTATTATTTGACTGAGATTTGGGCCACTTATGGCTTATGTCTGTAGTCCAGATCTGGGCCATTCAAGGGCCGTCATTCTTTGCTGTATGTGGGCCAGGGGAAACCAGTTGTGTGGCCTAGAGCTAGGCCAGGCAACAATTGCTCTGTGGGGTGATGCAGCTTGTCACATTGTGTAATATTGACAAAAAAAATAACATCAATATTTTCTGGGATTTTATCGATAATGATGATCAGACAATATTTTGAGTGTGAGTGTGTTATTGGCAGGTTTAGGGATGCTGTGGATAGCTGACTCCTAAAGTTTTTGTTATTTTTCATATTTTGTGCAGTGGTTAATTCGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_02992698_02995752.mRNA True 4256 mRNA 0.42 3 2989821 2996663

Neighbor

gene id symbol gene type direction distance location
CI01000112_02774549_02777028 SOCS3, SOCS3A coding upstream 211190 2773456 ~ 2778631 (+)
CI01000112_02740099_02758394 CYTH1, CYTH1A, CYH1 coding upstream 231427 2740099 ~ 2758394 (+)
CI01000112_02659891_02661832 NA coding upstream 327806 2659891 ~ 2662015 (+)
CI01000112_02585528_02607525 USP36 coding upstream 382153 2584929 ~ 2607668 (+)
CI01000112_02565726_02573879 TIMP2B coding upstream 415715 2565508 ~ 2574106 (+)
CI01000112_03085161_03094204 HID1 coding downstream 88498 3085161 ~ 3094406 (+)
CI01000112_03100235_03105799 USH1G, USH1GA coding downstream 102785 3099448 ~ 3106273 (+)
CI01000112_03112349_03117520 NA coding downstream 115686 3112349 ~ 3117587 (+)
CI01000112_03192658_03204707 MHC1ZBA coding downstream 194998 3191661 ~ 3205032 (+)
CI01000112_03234159_03240113 MHC1ZDA, MHC1ZBA coding downstream 236382 3233045 ~ 3240113 (+)
G329197 NA non-coding upstream 40657 2946342 ~ 2949164 (+)
G329192 NA non-coding upstream 58935 2927424 ~ 2930886 (+)
G329190 NA non-coding upstream 71653 2917949 ~ 2918168 (+)
G329184 NA non-coding upstream 88419 2901186 ~ 2901402 (+)
G329101 NA non-coding upstream 121092 2863085 ~ 2868729 (+)
G329195 NA non-coding downstream 30354 3027017 ~ 3048993 (+)
G329276 NA non-coding downstream 71168 3067831 ~ 3072729 (+)
G329277 NA non-coding downstream 101257 3097920 ~ 3098296 (+)
G329307 NA non-coding downstream 213478 3210141 ~ 3211831 (+)
G329354 NA non-coding downstream 221751 3218414 ~ 3218673 (+)
G329194 NA other upstream 57932 2920254 ~ 2931889 (+)
G329125 NA other upstream 371670 2617704 ~ 2618151 (+)
G328456 NA other upstream 1756703 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 2088057 5076817 ~ 5101845 (+)

Expression


Co-expression Network