CI01000112_02740099_02758394 (CYTH1, CYTH1A, CYH1)


Basic Information

Item Value
gene id CI01000112_02740099_02758394
gene name CYTH1, CYTH1A, CYH1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2740099 ~ 2758394 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_02740099_02758394.mRNA
TTTTTTTTAATCTCGTTCTCAGTGCCTGACGACCTCACGCCTGAGGAGCAAAAAGAACTGGAAAACATCCGCCGGCGAAAGCAGGAGCTGATGGACGACATTCAGCGTCTGAAGGATGAGATAGCTGAAGTGACCAGTGAGATTGAAAACCTGGGTTCCACCGAGGAGAGGAAAAACATGCAGAGGAACAAACAAGTGGCAATGGGCCGCAAGAAATTCAACATGGACCCCAAAAAGGGGATCCAGTTCCTCATTGAAAATGACCTTCTGAAGAACACCAGTGAAGACATTGCACGGTTCCTCTACAAGGGTGAAGGTCTTAACAAGACTGCAATAGGAGACTACCTAGGAGAGAGGGATGACTTCAATATCCAGGTCCTTCATGCTTTTGTGGAGCTGCATGAGTTCACAGATTTGAACCTGGTTCAGGCTCTCAGGCAGTTTCTCTGGAGTTTCAGACTTCCTGGTGAGGCACAAAAGATTGACAGAATGATGGAGGCGTTTGCCCAGCGCTACTGCCAATGCAACCCGGGAGTCTTTCAGTCCACAGACACATGCTATATTTTGTCCTTCGCCATCATCATGTTGAACACCAGCCTTCACAACCCAAACGTCAAGGACAAGCCCACAGTAGAGCGTTTCATCTCCATGAACAGAGGCATTAATGAGGGAGGAGACCTGCCAGAGGACCTGCTCAGGAACCTATATGACAGCATCAAGAATGAGCCCTTCAAAATCCCTGAGGATGACGGCAATGACTTGACGCACACTTTCTTCAACCCGGACAGAGAGGGCTGGCTACTCAAACTGGGGGGACGCGTCAAAACCTGGAAAAGACGGTGGTTCATCCTCACAGATAACTGCCTTTACTACTTTGAGTACACTACTGATAAAGAACCAAGAGGCATCATCCCTCTGGAAAACCTCAGCATTCGTGAAGTGGAGGACAAGAAGCCGCACTGCTTTGAGCTCTTCATCCCTGACAATAAGGACCAGGTGATCAAGGCATGTAAGACAGAGGCGGACGGACGGGTCGTCGAAGGGAACCACACCTTCTACCGCATCTCTGCTCCCACTGCCGAGGAGAAAGACGAATGGATGAACAGCATTAAAGCGGCCATCAGTAGAGATCCTTTCTACGAGATGCTGGCGGCGAGGAAGAAGAAGGTCTCCTCCGTGAAGAGACAC

Function

symbol description
cyth1a Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Is expressed in blastoderm. Orthologous to human CYTH1 (cytohesin 1).
cyth1 Enables guanyl-nucleotide exchange factor activity. Acts upstream of or within regulation of cell adhesion. Located in cytoplasm and plasma membrane.

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG:

id description
K18441 CYTH; cytohesin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_02740099_02758394.mRNA True 1188 mRNA 0.50 12 2740099 2758394

Neighbor

gene id symbol gene type direction distance location
CI01000112_02659891_02661832 NA coding upstream 78084 2659891 ~ 2662015 (+)
CI01000112_02585528_02607525 USP36 coding upstream 132431 2584929 ~ 2607668 (+)
CI01000112_02565726_02573879 TIMP2B coding upstream 165993 2565508 ~ 2574106 (+)
CI01000112_02541564_02549213 NA coding upstream 190655 2540950 ~ 2549444 (+)
CI01000112_02532994_02538052 NA coding upstream 201974 2530024 ~ 2538125 (+)
CI01000112_02774549_02777028 SOCS3, SOCS3A coding downstream 15062 2773456 ~ 2778631 (+)
CI01000112_02992698_02995752 NA coding downstream 231427 2989821 ~ 2996663 (+)
CI01000112_03085161_03094204 HID1 coding downstream 326767 3085161 ~ 3094406 (+)
CI01000112_03100235_03105799 USH1G, USH1GA coding downstream 341054 3099448 ~ 3106273 (+)
CI01000112_03112349_03117520 NA coding downstream 353955 3112349 ~ 3117587 (+)
G329097 NA non-coding upstream 86738 2650374 ~ 2653361 (+)
G329098 NA non-coding upstream 197802 2541667 ~ 2542297 (+)
G329067 NA non-coding upstream 314901 2423842 ~ 2425198 (+)
G329080 NA non-coding upstream 327386 2412411 ~ 2412713 (+)
G329079 NA non-coding upstream 329379 2410495 ~ 2410720 (+)
G329145 NA non-coding downstream 14107 2772501 ~ 2772741 (+)
G329151 NA non-coding downstream 26646 2785040 ~ 2785269 (+)
G329153 NA non-coding downstream 30033 2788427 ~ 2788857 (+)
G329101 NA non-coding downstream 104691 2863085 ~ 2868729 (+)
G329184 NA non-coding downstream 142792 2901186 ~ 2901402 (+)
G329125 NA other upstream 121948 2617704 ~ 2618151 (+)
G328456 NA other upstream 1506981 1232022 ~ 1233118 (+)
G329194 NA other downstream 161860 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 2326326 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026842 cyth1a coding NC_007114.7 CM002887.2 57462228 ~ 57530323 (-)
mexican tetra (Astyanax mexicanus) G64822 cyth1,LOC103392816,LOC108277039 non-coding NC_035903.1 CM008306.1 18418747 ~ 18422187 (+)