CI01000112_02659891_02661832


Basic Information

Item Value
gene id CI01000112_02659891_02661832
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 2659891 ~ 2662015 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_02659891_02661832.mRNA
TGGTGGGAGAGCTGACCAGATCAGAGATGTGTCCTGTCAGACCAGCACATCCTCCTCCTGTCAGAAACACATCAGTCATCATGACACAGAAGCAGCCCTGCAGCTCGATTCTCACCAGCCAGTGCACAATGATCTTCAGAGAGTCAAAGACCTGCACAAAACCAGCATGAAGAACAGATATGAGAGCGTATTTGAGGGAGTCAAACTACAAGAGCATCAGACGCTCCTGAACAGGATTTACACACAGCTGTACATCATAGAGGGAGAGAGTGAAGGAGTGAATGAAGAACATGAGGTGCTACAGATGGAGAAAAGTTATAAGACACTCCAAGACACTGCAATCAACTGCAATGACATCTTTGATCCTTCACCTGAACCAGGATATGAGGAGAAGAGAAGAGAGAAGAAAGACAAAATCAAGACTGTTCTTACTAAAGGCATCGCTGGAATTGGAAAAACCGTCTCTGTGCAGAAGTTCATTCTGGACTGGGCCGAGGGAAAAGCCAATCAGGACGTAGATTTCATGTTTGTGCTTCCATTTAGAGAGCTGAACTTGATTAAAGATCACCAGTACAGTCTTCACAGACTTCTGCTGGACTTTCATCCTGAACTTCAATATCTGGACTCAAAGATGTATGATGAATGTACAGTTGTGTTCATCTTTGATGGTCTGGATGAAAGCAGAATTACACTGAAGTTTTCAGGCGGTGAGAAAGTTTCTGATGTGTCTGAGACTTCATCAGTGGGTGCGTTGATCTCAAACCTCATGAAAGGAGATCTGCTTCTCTCTGCTCTCATCTGGATCACCACCAGACCAGCAGCAGCCAATCAGATCCCCTCTAACTACATCAACCGTGTGACAGAAATTCAGGGATTCAATGACCCTCAGAAGGAGGAATATTTCAGGAAGAGAATCAGTGATGAGCATCAAGCCAGCAGAATCATCTCACACATCAGAAGAGCAAGAAGCCTCCACATCATGTGCCACATACCCGTCTTCTGCTGGATCTCAGCCACTGTGCTTCAAAACATCCTGAAACAAGATCTCAGTGCAGAAATTCCTCAAACTCTGACTGAAATGTACATACACTTCCTGCTCATTCAAATAAATATGAGGAACCAGAAGTATGAAGAGAGAGATCCAGAGAAACCCCTGCAGTCCAACAGAGACGTGATTGTGAAACTTGCTGAACTGGCTTTCAATCAGCTGATGAAGGACAATGTGATGTTCTATGAGGAGGACCTGAGAGAGAGCGGCATAGACGTCACTGACGCCTCAGTGTATTCTGGGATTTGCACTGAGATCTTTAGGGAGGAATCTGTGATTTATCACAGGAAGGTTTACAGCTTTGTACATCTGAGCTTTCAGGAGTTTTTTGCAGCACTGTATGTGTTTTTCTGCTATTTACACAAGAACAGTGAAGTTCTGAAAATGTTCTTGACTGGAAAGTCTAGAACTCAGTGTGGGAATGTTTCTCTGGATGTGTTTCTGAAGGGAGCAATGAATGAAGCCTTGAACAGTAAAACTGGACATCTGGATCTTTTCCTTCGATTCCTTCATGGCATCTCACTGGAGTCCAATCAGAGAGTCTTACAGGATCTGCTGATTCACACCGAGAACAACCCAGAGAGCATCAAGAAAATAATCCAAAACCTCAAACGAGGTCAAAAAAACAATGTCAGTCCTGAAAGATGGATGAATCTGACACACTGCTTGATTGAGATGAAGAATAATTCTGTTGTTGAGGAAGTACAGATGTTTTTAAAATCTAAAGCAAAAAGTAAAAGTCTTTCTCTTGCACAATGTTCAACATTAGCAAACATGATCCTGATGTCAGAAGAGGTGATGGATGAGTTAGACTTTATGAAGTACAACATCAAATCAAAAGAGGGGAGATGGAGACTGGTACCTGCTGTGAGGAACTGCAGAAAAGCTCTGTGAGTGTGAAGATCTAATAATAGTACAATATGAACGTAATGTAAAAGAATTTTTGATGAAGGTTTGATGAGTAATTTTTGGGTTTGTGTTCACAAGCATAATGTGCCTTTAACTTTTGCAGCTAAATGTTTTTTTTTTGTTTTTTTTTTTAATTTTCAACCAAATTAATACTATTAGTTTTATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_02659891_02661832.mRNA True 2125 mRNA 0.42 1 2659891 2662015

Neighbor

gene id symbol gene type direction distance location
CI01000112_02585528_02607525 USP36 coding upstream 52223 2584929 ~ 2607668 (+)
CI01000112_02565726_02573879 TIMP2B coding upstream 85785 2565508 ~ 2574106 (+)
CI01000112_02541564_02549213 NA coding upstream 110447 2540950 ~ 2549444 (+)
CI01000112_02532994_02538052 NA coding upstream 121766 2530024 ~ 2538125 (+)
CI01000112_02503439_02516455 LGALS3BPA, LGALS3BPB coding upstream 143255 2502872 ~ 2516636 (+)
CI01000112_02740099_02758394 CYTH1, CYTH1A, CYH1 coding downstream 78084 2740099 ~ 2758394 (+)
CI01000112_02774549_02777028 SOCS3, SOCS3A coding downstream 111441 2773456 ~ 2778631 (+)
CI01000112_02992698_02995752 NA coding downstream 327806 2989821 ~ 2996663 (+)
CI01000112_03085161_03094204 HID1 coding downstream 423146 3085161 ~ 3094406 (+)
CI01000112_03100235_03105799 USH1G, USH1GA coding downstream 437433 3099448 ~ 3106273 (+)
G329097 NA non-coding upstream 6530 2650374 ~ 2653361 (+)
G329098 NA non-coding upstream 117594 2541667 ~ 2542297 (+)
G329067 NA non-coding upstream 234693 2423842 ~ 2425198 (+)
G329080 NA non-coding upstream 247178 2412411 ~ 2412713 (+)
G329079 NA non-coding upstream 249171 2410495 ~ 2410720 (+)
G329145 NA non-coding downstream 110486 2772501 ~ 2772741 (+)
G329151 NA non-coding downstream 123025 2785040 ~ 2785269 (+)
G329153 NA non-coding downstream 126412 2788427 ~ 2788857 (+)
G329101 NA non-coding downstream 201070 2863085 ~ 2868729 (+)
G329184 NA non-coding downstream 239171 2901186 ~ 2901402 (+)
G329125 NA other upstream 41740 2617704 ~ 2618151 (+)
G328456 NA other upstream 1426773 1232022 ~ 1233118 (+)
G329194 NA other downstream 258239 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 2422705 5076817 ~ 5101845 (+)

Expression


Co-expression Network