XLOC_026843 (usp36)


Basic Information

Item Value
gene id XLOC_026843
gene name usp36
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57583656 ~ 57630791 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052201
ACGCCCTTTCATAATGCAGCATGGGGCAGAGAACGTAACAAAATGAAGGCTTCGTAGCGGAATACAGTCTTAACATCAAAACACACCCGTCGATTCGCGATCATTCACGGATGGTGACACATAATGCCGATAGTGGACAAGCTCAAAGAGGCCCTGAAGCCGGGACGCAAGGACCCTGGTGATGAGGGCGACCTGAACAAGCTGCTAGCTTCATCCGCCAAGAAGGTGTTGCTGCAGAAGATCGAGTTTGAGCCGGCCAGCAAAGGCTTCAGCTACCAGCTGGAGACCCTCAAAACCAAATATGTGATCCTGAACCCTAAGAATGATGCGGCCACATCGCAGAGACCTACTGAACCTGCTCAGATTAAGAGGCAAATCTCAGAGTCTCTGAGTGTCGGGCAGAGCGATGGCATCCCCGCTCCGCAGAAGATGCTCTTTCCAGGGAACAAGCTGTCCATGAAGTGGGAACGGGTGTATCGGGTTGGAGCCGGCCTCCACAACCTGGGCAACACCTGCTTCCTCAACTCCACTGTGCAGTGTCTGACCTACACCCCGCCGCTGGCCAACTACCTGCTGTCCAAGGAGCACAGCCGATCCTGTCACCAGTCCGGATTCTGCATGATTTGCGTGATGCAGAACCATATCATTCAAGCCTTTGCCAACACAGCCAATGCCATCAAACCTGTATCTTTCATCCGGGATCTGAAAAAGATCGCTCGGCATTTTCGATTTGGCAGTCAAGAGGACGCCCATGAGTTTCTGCGTTACACTATTGATGCCATGCAGAAAGCTTGTTTGAATGGTTATCCTAAGCTGGACAGGCAGACGCAGGCCACCACACTAGTCCACCAGATATTTGGAGGATATTTGAGGTCAAGAGTGAAATGCTCTATTTGTAAAAGCGTTTCCGATACCTATGACCCCTACCTGGACATCGCTCTGGAGATTCGGcaAGCAGCCAACATCGTTCGTGCTCTGGAGCTGTTCGTCAAGCCTGATGTTTTGAGCGGAGAGAACGCCTACATGTGTGCCAAATGTAAGAAGAAAGTTCCAGCTACCAAGCGCTTCACAGTTCACAGAACCTCAAATGTGCTCACGCTGTCGCTGAAAAGGTTTGCCAACTTCagtggagggaaaattaccaagGATGTCGGCTACCCGGAGTTCCTGAACATTCGTCCGTACATGTCACAGAGCAGTGGAGATCCGGTGATGTACGGCCTGTACGCGGTCCTCGTGCATTCAGGGTACAGCTGCCATGCTGGGCATTACTACTGCTACGTCAAGGCCAGTAATGGACAGTGGTATCAGATGAACGACTCCATGGTTCATTCCAGTAACATCAAGGTTGTTCTTAATCAGCAGGCCTATGTGCTCTTCTATTTGAGGATTCCTGAAAAGAAAAACACAGATGCAAAGCAGAACATGGTGCACTCTGGGAGAACTAACATGACACCGGAGCAGCTGAAGAAAAGCACACTTAATGGACCTTTGTCTTCACCCCAGGTCACAAAGAAGCTAGATCCGGCTCAGCTGAGAAAGATCCAGTCAGTGGATGGAGGTCTTGGTGTTCCTGTTGCCAGGAACTGTTCGGGACTCCAGTCGCCGAAGCTGTCTAATGGGACGAGCAACTCTCATGCCCTGCTCAAACCGGCCAGTGGACCCTCGCTTATAGAAGAACCCTTGAAGAAGGTGAAGAAACCCACAGCTCAGCCTCACTCCCGCAGCAGCACTCCTGCTCCATCCAGCGGCCTCCACAAAACCAACAGCAAACAACTGCCGTCATCTACCTCACTCAAATCTCTGTCCGACTCCTCCTCAGcagacacctcctcctcctccgagTCCAGAGAGTCTGTTGGTACAAGGAGTGCTCCCGCTGGAGATCCGTCAAGTGTGAACAGTCCAGCATCTCCAGCCAAGAGCACAGAGGAGCAGAAGAAACTTAAACCGCAGGCCCTCACCAATGTCACATCAGAGCCTATCAGCACCATGTCGCCGCCGCCTGCCAAACGGCTTGCCCTGTCAGCCAAGAAGGCCAGTGTCCGGCAGAGCCTGAGCAGCAGCACTGAGGCTCGGCCCCCTTCATCTTTTCATCTGTCCAGTGACCCCACACACTTTCTCAGCCCAGCCTCGCTCCACCCGCACCACAGATTTTCACCTCATTCGCTCAGCCTTCAGTCTCCACCTTCAGCTCACCTTTCTAAAGATTTGAGTCCCCTTAAACGGCCCTCCTCCACTCTGGAGCCACTCGCTCCTGCTCTCTCTCCGCAGACCAATGGCCATCAGCCACACAGTTCACCCAGACCAATTCAAAGCCAGAACTTGTCAGCCTCAACCACACCACTTCTCGCCAGTCCTGTagtaaaaaacaagaaaaagaagcTAAAAAGATCACATTCAGAAGTGGAGCAGGAATACCTTACAGCTTCAGCCCCTGAAGAACCAAAGTCAAGAGCTGAAaaccagaagaagaagaagaaaaagaagaaacggAAAAGGGAGGCAGAGGCAGATGATCTTGAGGGACAGAGAGAGAGCGTGGAGTCCCATCTTGAGCCCCATCAAGATGAGGACTGGTGTCTGGGAGAAACATGGAGCATCGGCTCTGCTGCCAAAGGAGATGAGTTTAAGCTTTCTGAAGCGGAGGAGATTCACCAGAACAAACCTCAGTCTGTGCCTGAGAAACACCACGacctgaagaagaagaagaagaaaaagaagcacAAACTCGCTGAGCAACTGGAGGAGCACAGAAATGGAGCCACATCATCGAAGTGcGCTGTTGTAAAAGAAATTGGTGATGCTAATGAGAAGACAGAGGAGCTACGAAAGaccaagaagaaaaagaaaaagagaaaaccgAAAGATTTCCTAGAAGAGAATGAAAGGCAGAGCAATGGAGGAAGCCTTCACATAGATCTTCGAGAGACAAACAGAATTGAGTCCAGTGAGATGAGCAATGCGGACAAGAGGAAACCTGATAAATCGAAACCAGCTCCAGTGATTGTTTGGGACAGTCAGGTTCAAGATGGATTCAAGAGCAGCCAGAATCATGAAGAAGCAGAGGACATGTCTGGCAAAAAGTCCTGCGCTGTTCCTGTTTGCTGGGACGGCAAGAAAAGCTGTGATGTGGTTCAGGAGCTCCTCAAGAACTCCTCTGATAAAGCCTATGGAACTGAGGTTCTCAGTTGGGAAGGCGATCCGTCACTCATCAGCAGAGATGCCGTTCAGGATTCACGCTACGCTAAAAACCTGACTGTCATTGATGAGTGGGATAGTGAGTTCGACAGCGGAAAGGtgaagaaaattaaaaaatacaaaaaggacAGGAGGTGGAACGGAAACGTCTTCCAGAAGATCCAGGAACATCGTAACATGTGGTCTGTGACGGGTGGCAGACGGTGCAGTCTGGGCTATCGACACTCAACGttttgagATGCGGGTCCCAAGCGCGTGCCGTGACCAGACCAGTTGCCTTATTGGATCAGAAGCAGTCAGATCTGTCTCGGATTCTCCCGAAGAACACAAGTTACCCAGAATGCAGCAGTACTGTGAAATAAAGCGATGAGGCTGAGGCTCTCTCTCTTCAGGCCGTCCGAAATCCACAATATATTCCACTAACGGTGCCCTTATGATCTTAGGGGTCATAGTAAATGTGAGTCATCACCCTGTTCACCTTTCACGAGCCTATAGAAACAAATGTTAAACCGGACTGCTTTTAAAGGACTGTTCGAGATGAAATGGCCAATGATCCAGACTTCCCGTTTCTCATTGTAAACACGGGAAACTGAAGCTGCCACCTGCTAATGGTTTAAAGTGTAATTCACATATTATCTCCCCTTATCCAATCATTTAGCTTAGCCATATTTAAGCCACTTCCCTATATTATAAGACAAGTGTTTTCATGATTTCTGGAGGAAGAAGTCGTCTTTATTAATTGTCAAAAATTAATTATCTTTAATATTCCTCAGACGTGGCGTTCTGCATTACAATACATCAAGGTCATACTTCTTTCCCTCATCAAATCCACATTTGCAGTGATTAAAAAGTGACTCTCTTGTGACCATTTCCAGTCTGACGACGTGTCTCTTATGCACAAAAACGCTGCATACGACAATGCAATACATTTCATCCATGcgagataaacaaacaaacaaacacgggCCTTAACACAAACCACTGTGTTTTCGCCAGGAGGGCTGAAACGGCTAATAATTAGACTCTGGATCTGCTTGTTTGAGTTAGCGTTTCCCCCCCCCATCCTGCATCTCTTATTCTACTCTCTATGCAACTGCAGTCAATCCTGAGGATGGTCAGTCCTGGGAGAAACTCTTCGAACGCTGGTCCAAACGTCCTCCGCGTGAGCTGTAAAACACCCCGTCGTCCGCGTCCGTTCACCGTGCTTTTCTACATCGATGTACATGCTAATAATCCACCGCAGGAGGAAAGCAATGATGAAGTTAAGGACATTGTACAGTCGACCTTGTGCTCTCCGTGATTCCCCCTGTCATGAATTTGTTTCGGATTTTAGAGAAGTTGCCTTGGTTTAATTTTTAAAGAAGCGAATAGAACATATTGCAAATTCTACTTATTAAATGCACATCGCTAAAGTGAAGCCTAATGTATTTAAGGTTTGTGGAAATGTAAACGAGGAGTTTTATTAAccagtaggtgtgtgtgtgtgtgtgttgaaagaCTGCTCTGAGGTCTTGTTCAGGACTGGACACACATACGCACGTTCAACACTTGCGTTCTGTAGGATGTCTGTTTCCTCTTAGAGACTCACTGGAGATACTGTAGGTTATTTCAGAGACTGAATGCTGACGAACACAAGCGTGTCATGTTCGAGTCGATGGTTCTGTACCTAATGCCTTTTCTGAAGAGAAGTCATTCAGTAttgcaaatacataaatatagATATACTGGTGCAATAAAGTTGTGACTTTTTGTGAA

Function

symbol description
usp36 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP36 (ubiquitin specific peptidase 36).

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5450 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP36 (ubiquitin specific peptidase 36).

Ensembl:

ensembl_id ENSDARG00000032327

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052201 True 4956 mRNA 0.48 21 57583656 57630791

Neighbor

gene id symbol gene type direction distance location
XLOC_026842 cyth1a coding downstream 53333 57462228 ~ 57530323 (-)
XLOC_026841 socs3a coding downstream 157695 57423137 ~ 57425961 (-)
XLOC_026840 NA coding downstream 545986 57037094 ~ 57037670 (-)
XLOC_026839 hid1a coding downstream 650078 56921990 ~ 56933578 (-)
XLOC_026838 ush1ga coding downstream 686954 56882832 ~ 56896702 (-)
XLOC_026844 timp2b coding upstream 2174 57632965 ~ 57666996 (-)
XLOC_026845 lgals3bpa coding upstream 68455 57699246 ~ 57711711 (-)
XLOC_026846 zgc:112492 coding upstream 87576 57718367 ~ 57737913 (-)
XLOC_026847 lgals3bpb coding upstream 111142 57741933 ~ 57744323 (-)
XLOC_026848 cant1a coding upstream 116925 57747716 ~ 57765169 (-)
XLOC_026834 CU855917.1 non-coding downstream 1170633 56411141 ~ 56413023 (-)
XLOC_026831 NA non-coding downstream 1744142 55838454 ~ 55839514 (-)
XLOC_026814 NA non-coding downstream 2699476 54873401 ~ 54884180 (-)
XLOC_026812 NA non-coding downstream 2762756 54791553 ~ 54820900 (-)
XLOC_026851 CT583687.2 non-coding upstream 426823 58057614 ~ 58059819 (-)
XLOC_026854 NA non-coding upstream 477640 58108431 ~ 58110154 (-)
XLOC_026858 CABZ01038493.1 non-coding upstream 579514 58210305 ~ 58217276 (-)
XLOC_026860 NA non-coding upstream 661518 58292309 ~ 58296549 (-)
XLOC_026861 NA non-coding upstream 669429 58300220 ~ 58303257 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_02585528_02607525 USP36 coding CI01000112 null 2584929 ~ 2607668 (+)
bowfin (Amia calva) AMCG00013225 usp36,LOC107717487,LOC104948677 coding CM030125.1 CM030125.1 25231148 ~ 25255201 (+)