XLOC_026845 (lgals3bpa)


Basic Information

Item Value
gene id XLOC_026845
gene name lgals3bpa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57699246 ~ 57711711 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052204
CGTTCTTCTGTTGAGTCTCAAGCTAGAATGATCATGTATATTATATGGGCATTGCTGTTTATTCCTGTGTCGGCTCAGCAATGGACTCTGTTTGATGAGCAGGCAAAGCCTAAGCGGGAGGGCAGAGTAAGACTGGTTGGAGGTCTTTCCTCATCTGGCCGTGTGGAGGTCTACCATGATGGACAGTGGGGTACAGTCTGTGATGATGGATGGGATCTGGCTGAAGGGCAGGTGGTGTGTCGTCAGCTGGGTTTTCCTGGAGCCGTATCAGTTGCTTCTGGAGGGCAATATGGTGAAGggTCTGGTCCAATCTGGCTGGATGATATGAACTGTAAAGGCTCAGAGAGCATATTGTCTGAATGCTGCTTTAAAGGCTGGGGTGTCAATGACTGCACACATCAAGAGGACGCTGGAGTGGTTTGTGACACTGGTACAAACGCAACCAACATCCGTCAGATCTCTGTGGATAACAGTCTGGGATTGTCAGATGATCTCGGTTTCCTGTTTGACAGTGAAGACGGTTGTGATTTCATCATTGCTGTACAAGATCTTAGTGAAGAAGCTGAATTGACTCTTTGTGTGCACCGTGTGATCCTCATGATGTATCCCGAGCTAAACATAACAAATGACACCAGAAACCTTACAGTTGATGTCAGCCAGACTTGTCAGTCCCATGTCTCTGCTTTGATCAGGTATTTGTACACCCATCAGATTGATGTCTCCGCAACATCCGCTCAGTGTCTCCATCAGCTGGCGTTCATCTTTGGAGTGAAGAAGCTCATGGAGGATGTTGGCAGGGTCTTCACTGCACTCATTCCTGAAGACAACACCTTCCAGACGCAGGTGTCAATGTACGAGTATGGCGTGCGCACAGGTGACCTTGTCCTCCAGGAGAACGTTCTCCAGTATCTTTCCTGGAACTGCGAGTTCCTCATAAGCTCTCCAGTGTGGAGCACCGTCTCGTTTGAGATGATGGATGCTCTGCTGCAGCGCTCAGACCTGATTGTGAAGGACGAAGCTGTTCTTCTTGAAGCTCTGGAGAGATGGATCCAAGACAAAGGTGACCAGATTAGTTCAGATAAACAGGTCAGCCTCCTGAGTCACATCCGCTTCCTCTTAATCCCAGTGGATAAACTCTATGACATGCAATTTTCCTCAAGTGCTCTCTATCAGAATAACGAGAAACTGTATCTGACTGGACTGCTCAGAGGATTTGAGTTCAATGCTCTACCCTTCTCTAAGATCAGGAATCAAATAGATAACGCAAGCAGTGAGTATCTACCCAGAATCTACACTGGAGATGAGTGGAGTGTATTTATCAATGACACAACTGTCAGTAGCCcgtattataattataattactatGGCCAAAGCAACAGAATCCAGACCTTTTTCACTTCTGCACACCCTAGTGCTCTTTACAAAGATCAGAAGGTCCAGTGGCAAGCCCAAGTTTTTCTTACTCTCCAGGAATGCTCTAACTATGGTGTTTCATGTAATACTTTGCCTGTTGCACGTTTTTATGGATATAGCAATCAGTACAGTTACTCCAACATCATTAGCTACAACAACAGGTTAATTCTTACCTGTAAAAATCAGAACAATGTCTTCCATGTGCAAGAATTCAAAAACGACGTGGTAGTGGTTCCAACTAACAGCAGCATGGTTCTGCCGAACCCCTGTCCAGATGACTACAACTTCAGATTTGTCGTGCGTCCACAGTACATCTGACTACTGTCAacttcatataatttttttctggtgttttaattaattttttatttttgttttttcaaattaaaatcaTGATTAATCTTCATACCGTGCACTGTAAGATAATGATCATTTTACTAATATGAGAAGGGTTAATATGTAATCATTTAGATTATGTCATGTAATAATTCAATATTTAGCCATAAATAATGTTTGGTTGTTTAATGATGcacttaaaagtaataaaaatgataatagaaaata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000037805

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052204 True 1977 mRNA 0.43 5 57699246 57711711

Neighbor

gene id symbol gene type direction distance location
XLOC_026844 timp2b coding downstream 32250 57632965 ~ 57666996 (-)
XLOC_026843 usp36 coding downstream 68455 57583656 ~ 57630791 (-)
XLOC_026842 cyth1a coding downstream 168923 57462228 ~ 57530323 (-)
XLOC_026841 socs3a coding downstream 273285 57423137 ~ 57425961 (-)
XLOC_026840 NA coding downstream 661576 57037094 ~ 57037670 (-)
XLOC_026846 zgc:112492 coding upstream 6656 57718367 ~ 57737913 (-)
XLOC_026847 lgals3bpb coding upstream 30222 57741933 ~ 57744323 (-)
XLOC_026848 cant1a coding upstream 36005 57747716 ~ 57765169 (-)
XLOC_026849 syngr2a coding upstream 54916 57766627 ~ 57779801 (-)
XLOC_026850 si:ch211-256e16.10 coding upstream 327550 58039261 ~ 58046319 (-)
XLOC_026834 CU855917.1 non-coding downstream 1286223 56411141 ~ 56413023 (-)
XLOC_026831 NA non-coding downstream 1859732 55838454 ~ 55839514 (-)
XLOC_026814 NA non-coding downstream 2815066 54873401 ~ 54884180 (-)
XLOC_026812 NA non-coding downstream 2878346 54791553 ~ 54820900 (-)
XLOC_026851 CT583687.2 non-coding upstream 345903 58057614 ~ 58059819 (-)
XLOC_026854 NA non-coding upstream 396720 58108431 ~ 58110154 (-)
XLOC_026858 CABZ01038493.1 non-coding upstream 498594 58210305 ~ 58217276 (-)
XLOC_026860 NA non-coding upstream 580598 58292309 ~ 58296549 (-)
XLOC_026861 NA non-coding upstream 588509 58300220 ~ 58303257 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_02483013_02484955 LGALS3BPA coding CI01000112 null 2483013 ~ 2485133 (+)