XLOC_026850 (si:ch211-256e16.10)


Basic Information

Item Value
gene id XLOC_026850
gene name si:ch211-256e16.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58039261 ~ 58046319 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052210
TCAAGACAGATTTTGGAACAAAGGAGTCTCCATATGTCGAGTGGTACTGGTGGGGAAGGTCACTCTCAGTCGATATTTTATCTCTGACCACGGCTTGCAGGATGGACTTGTACAAATTTCCCTTCGACACCCAAATCTGCAATATAACATTTCACTCTGCTGTGTATACAGATAAGGAGTTGGTTATTTATCCATTTACTCAATCAAAGAACCTTACTCAGGATTCCAAGGATCTATTTGAGGCCCAGGGAGAGTGGGAACTCgtcttaataaattattttaacacTAAAGCCACGATTGTGGGAAATTTGCAAGATCTGCTGGTTTATCAGATCACCATCAAGAGGAGACCTTTACTGTACGTCATCAACATTATCCTACCAGTGTTTTCCTTCCTTGTGCTGGACGTGACCTCATTCTTCATAGACGCAGACGGAGCAGACAAGCTGAGCTTTAAAGTGACTTTACTGCTGGCTATTTCTGTGCTACTGCTGATTCTTAATGACACACTGCCCTCTACAGCTGATAAGCTTCCTCTGATTGGGATTTACTGCAGTGTGATTTTCAGTCTCATTGGGTTCAGTATACTGGAGACCATCTTTGTGAATTACCTGAAGGCTAAAGGAGCTGAAAGTAAATCAGCTGCATTTATGCAGAGAACAGTCGCTGTTA

Function

symbol description
si:ch211-256e16.10 Predicted to enable serotonin-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097566

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052210 True 672 mRNA 0.42 4 58039261 58046319

Neighbor

gene id symbol gene type direction distance location
XLOC_026849 syngr2a coding downstream 259460 57766627 ~ 57779801 (-)
XLOC_026848 cant1a coding downstream 274092 57747716 ~ 57765169 (-)
XLOC_026847 lgals3bpb coding downstream 294938 57741933 ~ 57744323 (-)
XLOC_026846 zgc:112492 coding downstream 301348 57718367 ~ 57737913 (-)
XLOC_026845 lgals3bpa coding downstream 327550 57699246 ~ 57711711 (-)
XLOC_026851 CT583687.2 coding upstream 11295 58057614 ~ 58059819 (-)
XLOC_026852 si:ch211-256e16.8 coding upstream 21431 58067750 ~ 58078522 (-)
XLOC_026853 si:ch211-256e16.6 coding upstream 58580 58104899 ~ 58116314 (-)
XLOC_026854 NA coding upstream 62112 58108431 ~ 58110154 (-)
XLOC_026855 snu13a coding upstream 112276 58158595 ~ 58165254 (-)
XLOC_026840 NA non-coding downstream 1001591 57037094 ~ 57037670 (-)
XLOC_026834 CU855917.1 non-coding downstream 1626238 56411141 ~ 56413023 (-)
XLOC_026831 NA non-coding downstream 2199747 55838454 ~ 55839514 (-)
XLOC_026814 NA non-coding downstream 3155081 54873401 ~ 54884180 (-)
XLOC_026812 NA non-coding downstream 3218361 54791553 ~ 54820900 (-)
XLOC_026858 CABZ01038493.1 non-coding upstream 163986 58210305 ~ 58217276 (-)
XLOC_026860 NA non-coding upstream 245990 58292309 ~ 58296549 (-)
XLOC_026861 NA non-coding upstream 253901 58300220 ~ 58303257 (-)

Expression


Co-expression Network