XLOC_026838 (ush1ga)


Basic Information

Item Value
gene id XLOC_026838
gene name ush1ga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56882832 ~ 56896702 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052195
GTCAGCTGAGACGAGCTGTGTCCAGTTTCACCTAGCACATGAACTTGTGAATTGTGTTGCCAtgttatgtattaaatataacttAGATCATATCAGCTCTGAGTAGATGTTTCACTGTTAAATGCCATGTCTGACATGGACCTGTCATGGATCTATTACTTTCAGGGGGAACCCAGATAAGTGTGACATATGGGGAAACACGCCACTTCACCTGGCTGCCTCCAATGGCCATCTCAACTGCCTGTCCTTCCTGGTGTCCTTTGGTGCCAACGTGTGGTGCCTGGACAACGACTACCACACGCCTTTGGACATGGCTGCCACCAAGAACCACATGGATTGCGTACGCTATCTGGACTCTATCGCGGCCAAGCAGACAGCCCTCAATCCAAAGCTAGTAAGCAAACTGAAGGACCGGGCCTTCCGGGATGCCGAACGGCGCATCAAGGAATGTGTGAAACTGCAGCAGAGGCACCGGCGGCGCATGGAGCGGAAGTTTCAGCGAGAGGCAACGGAAGCATCAGTTTCTGATGCCATGAGCTTCTCCAGCTACGCCAGCAGCACCTTGAGTCGCAAGTTACACCACTTCAACACTGCCACTAATGTGCCATACTCCCAGGCTACTATCCATGCCACAGCCAGGGGCAAAACTAAAATCCAGAAGAAGCTTGAGAAGAAAAAGCAAGGTGACGGGACATTCAAGATTTATGAAGATGGCCGGAAAAGTGTGCGCTCCTTGTCTGGTTTACAGCTAGGCAACGACGTCATGTTTCTGAAGCAAGGTACGTATGTGAACCCTAAAGACCGGTCTCGTCGCAACATACGTGACATGTTCCCCAGTGACAACGAGGATGCCATCTCACGTGCCATCAGTGAACCGGACCTGCATGGTCAAGATGTGGACTACTCCGAGATCAGCACTGACTCAGGCCACGACTCGCTCTTCAACCGGCCTGGCCTGGGCACAATGGTTTTCCGTCGCAACTATGTGAGCGGTGGACTTTTTGGCATTGGTAGCAGAGATGAAGGCAGCCTGACCGGCAGTGAACGAGTCGATAATGTGCGTCTCCAAAATCGAATGCATCCCAGTCTGGATGACGACAGCATTGGAAGTGCCCATAGCTTGCAGGAGAGGAACATTCAGGAGCTGCCTTGGGATGAGGTGGAGTTGGGtctggatgatgatgatgagcccGACACTAGTCCACTAGAAGTGTTCCTGGCCACGCAAAGCATGAATGAGTTTATTCCTATATTAAAAAGAGAGAAGATCGACCTGGATGCCCTGTTACTCTGCTCAGACAATGACCTTAAGGGCATTCACATCCCCTTGGGACCCCGCAAGAAGATCATGGACGCCTGTATGCGCCGACTGGAGACATTAGAGGAACCAGGCCCCATAGAAGACACTGAGATGTGAAGTTCTTGCCTTAATGTCTGTTTTACCTCAGTGAACGTTGAAGAATAAGCAAGAGTTTACAGGCTAGAGTTTGTGCCATTTTTCTTTGAAGATGGCAAAAGTTGCATTGTCAACATTTGGCCAACACTGTCGAGAAACTAATGAGATAGAAACCTAAACTAGGGGTGTCCAGTCCTGCTGCTAAAGGCCCACTATCCTGCAAAGTTTAACTCCAGCACAGCTGTCGGGATGTTTCTAGTGTTCCTGAAAACCATAACTAGCTGGTTAAGTGTGTTAAAATGGGGACCTTCCATGAGAAGAGCTGAACCCCCTGGTGTAAATGAACCCCTAGGGTTCAACATcactaaaaacacattttttagaaaattatattgttattgtcACTGTGTTAACCACGTAAACATGcagttatatgtatatataggtaTGCACGAATATTTGAATAACAATTTGACTGAAATAATTCATGCGACCATGGACCACAAAAGGGCCAATTTTATGACAATGAGATGTATGTAACTTCTAAAAGTTGTATAggtaagctttccattgatgtatggtttgttatgaTAGGCGAATATTTAACAGAGATAAAGCTATTGAAAATTTGGAAGCTGAGGTTTCAAAAAAATAAGTTCAAATTAGGTCCTTGGCACagcatattattatttaagttttgatatatttacttaATCTTGACTTAATATCCTAATAATgctttttggcataaaagaaatattttaaatcataGTCACAGTTTATTTGTTGACTACTTCGACaaatatgacttttttatttattaaagactttcagattttgtggtccagggtcacatatatgcACATGCCCCTTATAATGTTATCATGCCTGGCTTGGCATGCAGATATAAGTATACAACATGGTTTTGTGAAAGCTGCGCTTTTCTAAAACAAAAGGGAAAACCTTTCAGTTTTTAGTATGTTGCTGTTTAGTAAATGTATCCTAAATCCAACTTAGAAAACAATCCATGCATAAAGAGTCTGTTGTAATAACACAATAGCGGTTTTATAGTAGAGCTTTATAGTGGACTGCTGTTGCTGAAAGACTATATTACCTCTGTAACTGACACAAACAGCGCAATATACATAAAACGGTTATTCAGTTCAAAATGTAATGATTATCATGTGCCATGTGGCAAACGCAGGGAGCGAAAATGAGGTCACATCTCATTACAAGCACTCTTATAATACTCCTGCCCCTATGGGGCATACATCTCAGTGCCTGTGCTATCCGTGCCAGCACATTTCTATACAAAATGTCATTTAAGACATAACATGTTGTACATAATTTGATAAGTTCTTTGTAATACATGCAAAGCTGGTGTATGCTACACACTATGGCAGCAGAGCTATTCTCAATAAAACACAGAAAGATCCAAATGATGTATCACAACTTTGTCTTGTAAATGGAGGACAAATGctgaaatatacagtaaatggGTTAACAGAATCTGATTTCTGTATGTAGTATAAAAGtctgtagctgcgtcccaaatcgcatgcactattctacgccattttgtagtataaatagtgtaagtagtgtgttcacactgaaaactctaaaaataataagagcactttaattacccggatgatgcactcattcagccgctaaaatgaagtgtggaatgatggacacttcacgcacacAACGACCGCaagtttgctcacgtagcggaagaggcggagctatcgggcgcacatgttggataactatttattttggatggtgaaagcaaaattctcctacgagagtgattacagcgcctcccgatggtgaacgcggttatactcacggcaggtattatttgataattcggtcgtttatttcactgatttggcgaccaacagacgtcattagggaaacggtttgaatttccgcttagtaaaaaaacagtgtttaatttgggatgacactacgtAAATATGCTATccttttgagtgtgtaagtgcataagtacatagtgtatagtgtgccatttgggacgcagcttttgtcTACAACAGGGGTCAACATGGTTGgccctggagggtcggtgtcctgcagaatttagcagCAACCTTTTCAAACACAACGGAACAAGCTAATTGTTGGCTGTATCTAAAAATCGCCCCGTAGGCTCATTCACTATGACTTACATTAGTTCACTAAAAAGTCCACTTAAAGGAGTGAATGAGAATGACTAAGTGAATTGGAGCACGGGGGGAACAGAAGGGATGTGGTTtagtttgtgctttgctggttgataaaataaaatgaagaaattaaaataaaaatgttgactCTCTGATAGTTATTTAGTACTTAGCATGCTGTCTATGAGCaatgaaacaaatacatttttataacgtttcattttaaaatgccaattcaacaattaaatattattttatttaaaaaggtacaCAGATAGGATTGCCCTATGGACGCCATCTTGTGGAAATTAATTCGAAGTGTGAATtctcacagtgcattatgggtatTCTCAAGCTGTTGAGTGTACGGCTAtgtccgaaatcgcctactactcagtaggtactgcatttgaatttaaatgaactACTTGGCCCTTAGAACGTTCTGAATGTGAGAAGTATGAATAGAACTCGGACGTACTACagccgccattttgtcatgattacGTGACCTACCCttgtcagttgcatcgcttcactcccattcatgaattctcttgcggtGCATTATGGGATAGAATAGCATCTAttagatgcacacttcagaatctcgcctgAAGTAGTAGGTCATTCGGATACTTCtgacatactgtttttcgaattgtATGAATTCTGTCATgttacttggctcgcatactctttttatagtatggaagtgtgcgatttcagacacagcctttCTCAATTGTACTCTTGTTATTGCAGAGCATAGTGGCATTGATTGAGCAAACAATATGGTTTTGGACGCTACCAAAAATGGCTGCTCCCTCAAATAGTGTCTGTTTAAGGCCTTGGTAAACTTCAAAAGGAATTAACTGAAATTACGTAATTTAGAAAGAAAATACAGCCACAACAAATTTTGTTTTGAGTCTGTTAAGAAGTCTGAAACCAGTCATCAAAGCAAACTTTTTGGGGGAGTTAGCTTTGGTCCTAAACACCTTAGAGCTACTATTGGTCTGTGATGATTATGGAATCGATGGATGTTTCCTGGAACTCTACGTTTTTTGACATGCTTTGTATTCATATTTGTGTTCGAATTCTGAGTTACACACCGAACGATAAGCACAACAGCATTGATCAATGTCTGATAAAGTTCTAAAAATGGTTCAAATCACTTTCTGTCCATGGCAAGTAAAAAGCGATGTGGTGTGTCAAGGCGGTTTGCTCCATAATTGTATGGAACTGTACATTTCTCTCAGTCGCCATTGTTGTTGTGTTTAGGAGTCCACTTGAGCGGTGTGACAGCTTTGCAACCCTACCTACCGCAGCGTCTGAACGTTCAAAAATAGTATATCATCACTCAGACTTTATGAGGATCTTTTTGGcctcaaatgaacttaaattgaAGTATGTTGTGGGGTTTAACGGCATAGAGGGCGATTTTGGATACAGCCTCAGTCTTGGAGAAATCtaaaggtgtgtttgattagggttggagataaactctgcaggacaccagccctccatgaCCACATTTGGTAACCCTTGGTCTACACCTTCACATTATGTTACAAATAATGTTTACATGTATCTGGccatagcattttcttttttttttaacatgagcAATTGGAAGAATTTTGTGCCGCATGATTAAGCGAGTTGATGCTGGAGATTTAACACGTGGAGCGTAGCTCTCGTTAACGCTGAGTCATTTAATTTATCACAGCACTCATTTTCCTGAAGTCTATTGTCAGTAAGCACATGTACAGGTCTGCAGGGAAGCACGTTCCTTAAAGCCCGTCTCTGCTTACGTCAATATTTATTAACAGCCATCTTTTATAATGCGTACATCAACTTTATTTATAATGGCATTCGTTGataactattaaactcattatcTTGGAGGTTTGTTTGTCTTTTAATGTGTCTGTCTGATTATATGTTTGTTGTAAAGATATTTCACGTGGTAGCCATTAAAGTGAAAAACAGATTTGACAGTAAACCTGGCTAAAAGTGTTAATGTATCTATTTGTGCAAACTGCTGTACGTATAGGGAAGCACATACAGCTCTTAATAATGCAAGTGCGATTTACAGCAGGTGATTTTGAATCTTTTGGAACTCCAATGCTCATCCTTGTTTGAAGGACTCCAATCCTGAAACGTTAAAGGTACCTCTACTGCatgggtgctcaaccctgttcctggagatttaccttcctgtagatttcagcAAACACACCTGACTTTAATTACCAATTGCTCCTTcaagttggtttagttgtgtttgattaaggttgaagggaaattctgcaggaaggtagatgtcgaggaacagggttg
>TCONS_00052196
CCATGAATGACAAATACCACAAGGCAGCTCGGGATGGCTACCTCGACCTGCTTAAAGAAGCGACGCGGAAGGACCTGAATGCGCCGGATGAAGATGGCATGACACCGACCCTATGGGCCGCGTACCACGGCAACCTGGACGCGCTGCGGCTGATCGCAGGGAGAGGGGGGAACCCAGATAAGTGTGACATATGGGGAAACACGCCACTTCACCTGGCTGCCTCCAATGGCCATCTCAACTGCCTGTCCTTCCTGGTGTCCTTTGGTGCCAACGTGTGGTGCCTGGACAACGACTACCACACGCCTTTGGACATGGCTGCCACCAAGAACCACATGGATTGCGTACGCTATCTGGACTCTATCGCGGCCAAGCAGACAGCCCTCAATCCAAAGCTAGTAAGCAAACTGAAGGACCGGGCCTTCCGGGATGCCGAACGGCGCATCAAGGAATGTGTGAAACTGCAGCAGAGGCACCGGCGGCGCATGGAGCGGAAGTTTCAGCGAGAGGCAACGGAAGCATCAGTTTCTGATGCCATGAGCTTCTCCAGCTACGCCAGCAGCACCTTGAGTCGCAAGTTACACCACTTCAACACTGCCACTAATGTGCCATACTCCCAGGCTACTATCCATGCCACAGCCAGGGGCAAAACTAAAATCCAGAAGAAGCTTGAGAAGAAAAAGCAAGGTGACGGGACATTCAAGATTTATGAAGATGGCCGGAAAAGTGTGCGCTCCTTGTCTGGTTTACAGCTAGGCAACGACGTCATGTTTCTGAAGCAAGGTACGTATGTGAACCCTAAAGACCGGTCTCGTCGCAACATACGTGACATGTTCCCCAGTGACAACGAGGATGCCATCTCACGTGCCATCAGTGAACCGGACCTGCATGGTCAAGATGTGGACTACTCCGAGATCAGCACTGACTCAGGCCACGACTCGCTCTTCAACCGGCCTGGCCTGGGCACAATGGTTTTCCGTCGCAACTATGTGAGCGGTGGACTTTTTGGCATTGGTAGCAGAGATGAAGGCAGCCTGACCGGCAGTGAACGAGTCGATAATGTGCGTCTCCAAAATCGAATGCATCCCAGTCTGGATGACGACAGCATTGGAAGTGCCCATAGCTTGCAGGAGAGGAACATTCAGGAGCTGCCTTGGGATGAGGTGGAGTTGGGtctggatgatgatgatgagcccGACACTAGTCCACTAGAAGTGTTCCTGGCCACGCAAAGCATGAATGAGTTTATTCCTATATTAAAAAGAGAGAAGATCGACCTGGATGCCCTGTTACTCTGCTCAGACAATGACCTTAAGGGCATTCACATCCCCTTGGGACCCCGCAAGAAGATCATGGACGCCTGTATGCGCCGACTGGAGACATTAGAGGAACCAGGCCCCATAGAAGACACTGAGATG

Function

symbol description
ush1ga Acts upstream of or within auditory receptor cell morphogenesis. Is expressed in hair cell anterior macula. Human ortholog(s) of this gene implicated in Usher syndrome type 1G. Orthologous to human USH1G (USH1 protein network component sans).

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0050957 equilibrioception biological_process
GO:0002093 auditory receptor cell morphogenesis biological_process
GO:0007605 sensory perception of sound biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-173 Acts upstream of or within auditory receptor cell morphogenesis. Is expressed in hair cell anterior macula. Human ortholog(s) of this gene implicated in Usher syndrome type 1G. Orthologous to human USH1G (USH1 protein network component sans).

Ensembl:

ensembl_id ENSDARG00000004322

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052195 False 5937 mRNA 0.41 2 56882832 56889052
TCONS_00052196 True 1415 mRNA 0.54 3 56887355 56896702

Neighbor

gene id symbol gene type direction distance location
XLOC_026837 zgc:112148 coding downstream 10848 56861059 ~ 56871984 (-)
XLOC_026836 stk19 coding downstream 265735 56601829 ~ 56617097 (-)
XLOC_026833 cyth1a coding downstream 307867 56408840 ~ 56574965 (-)
XLOC_026835 SMIM10 coding downstream 312864 56565300 ~ 56569968 (-)
XLOC_026834 CU855917.1 coding downstream 469809 56411141 ~ 56413023 (-)
XLOC_026839 hid1a coding upstream 25288 56921990 ~ 56933578 (-)
XLOC_026840 NA coding upstream 140392 57037094 ~ 57037670 (-)
XLOC_026841 socs3a coding upstream 526435 57423137 ~ 57425961 (-)
XLOC_026842 cyth1a coding upstream 565526 57462228 ~ 57530323 (-)
XLOC_026843 usp36 coding upstream 686954 57583656 ~ 57630791 (-)
XLOC_026831 NA non-coding downstream 1043318 55838454 ~ 55839514 (-)
XLOC_026814 NA non-coding downstream 1998652 54873401 ~ 54884180 (-)
XLOC_026812 NA non-coding downstream 2061932 54791553 ~ 54820900 (-)
XLOC_026811 NA non-coding downstream 2098511 54748396 ~ 54784321 (-)
XLOC_026851 CT583687.2 non-coding upstream 1160912 58057614 ~ 58059819 (-)
XLOC_026854 NA non-coding upstream 1211729 58108431 ~ 58110154 (-)
XLOC_026858 CABZ01038493.1 non-coding upstream 1313603 58210305 ~ 58217276 (-)
XLOC_026860 NA non-coding upstream 1395607 58292309 ~ 58296549 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_03100235_03105799 USH1G, USH1GA coding CI01000112 null 3099448 ~ 3106273 (+)
bowfin (Amia calva) AMCG00013262 ush1g,LOC107556601,LOC107698769,LOC107664446,LOC107568596 coding CM030125.1 CM030125.1 26501196 ~ 26512078 (-)