XLOC_026837 (zgc:112148)


Basic Information

Item Value
gene id XLOC_026837
gene name zgc:112148
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56861059 ~ 56871984 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052193
ttacacacatattgtttgctatatggaatgcaaaaactttgaagctcatttagaatgcagatagaagCTTATAATTCCAAGCTGAAATGTCAACAATGTTATCAACCAGCTCTGTGATAAAGGGATGACAATAAGACATGATGATAATAAGATATTATATTAGCGTCACGATTTTACGTAAATAACGTCATATTGTGTAAATCTGACCAGACAAATGGAATGTTGacttactttgaatcttttgagTTGTTCTCATTCCTGaattagtttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttttctcgaCAGAGTTGTCATAAGATGATTTTTCCAACCGTCAATTCAGGTAACCGACCAATCACAATCGTTTTTGAGTGATACGAAAATCatcaattagaaaaaaataaataaacattttaagatttCTGAGGTAGGTCGTGTAACGTTTTTCGTAGTTTATATAATGTGATAAAACATCTgcaataagataaaaaaaagtcATTGGATGACATGTGATGAACTGAATTATGAGCCACCGAACGCCCCCTAAAGGAAGACAATGAAATTCTTTATCAGTAAGGTTTGTTTCCCATAGAGCGGACACGTGTTGTTTACATACACGTCATCAGGAAATAAAACTACCTGCGTCAACATGATCCGACAGGTGAGTTTTCACTTATATTTCCTTTAAAGAAATATGTTATGATCCCTATTTATATTAAGTTTATCTATCTCTAGAAGATGCAATATTAAGGAAACTGTAACTATACAAACATAACTGCCGGCTGTGTAGAGCTGAATTCTTGACTGATTCAATGTTTATTTTGAAGGATTCTCAGGGTGAAGTGCCATTATTTCATGAGGACGAAAATGCATTTAGAGAGAAGAAATCAAACATCAAACATCCTCTGGCCTGCTTCTTTCACCTCTTCTTCCGCACAAGTGCCATCCTGATTTACCTCTTTTGTGAGTTACTCAGCCGAAGTTTTATTGCCAACATGGTTACCATCATTTTACTCCTCTCATGTGACTTCTGGACAGTAAAGAATGTGACAGGACGGCTGCTGGTGGGCTTGAGATGGTGGAATCAGGTTGATGAAGAAGGTCGCAGTCATTGGATGTTTGAATCTAGACCGGAGAGCAGTAAGAATGTGGTCTCGAACTCTGAGTCCCGGGTTTTCTGGTTTGGTCTGGTCTTGTGTCCCGTGTTTTGGGTTTTCTTTGTGTTCAGCTCTCTTTTCTCCTTCAacataaagtggctgGCGGTTGTGATCATGGGAGTTGTGCTGCAGTGGGCTAACCTATATGGATATGTGCGCTGTAAAGTAGGTGGTGGAAAAAACCTGAAGAACATGGCAACAAACTACTTGGGCATTAAGCTCTTTAATAAGGTACTAAACAAAACAGAAGAGCCCTAAAGTGAATGACTGATGTTTACTGATTAATACGTTTATTTTCCTACTAACATTTGTTCAAGTAATTTGTCTTTTagtatcatttttattttgtaaaacattcTTTTCTCTTGTTTACACTTGAATAGCTTTTCTTTTTGGTTAAATTGATCTAAAATTGTGTTGATTATgttattattcataaaataaatcatctttatttacaAATGCAGTGTGATGTGTTTCTTCACTTTGTCCCCAGGTGTCACTGTGGCTCTGtg
>TCONS_00052192
ttacacacatattgtttgctatatggaatgcaaaaactttgaagctcatttagaatgcagatagaagCTTATAATTCCAAGCTGAAATGTCAACAATGTTATCAACCAGCTCTGTGATAAAGGGATGACAATAAGACATGATGATAATAAGATATTATATTAGCGTCACGATTTTACGTAAATAACGTCATATTGTGTAAATCTGACCAGACAAATGGAATGTTGacttactttgaatcttttgagTTGTTCTCATTCCTGaattagtttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttttctcgaCAGAGTTGTCATAAGATGATTTTTCCAACCGTCAATTCAGGTAACCGACCAATCACAATCGTTTTTGAGTGATACGAAAATCatcaattagaaaaaaataaataaacattttaagatttCTGAGGTAGGTCGTGTAACGTTTTTCGTAGTTTATATAATGTGATAAAACATCTgcaataagataaaaaaaagtcATTGGATGACATGTGATGAACTGAATTATGAGCCACCGAACGCCCCCTAAAGGAAGACAATGAAATTCTTTATCAGTAAGGTTTGTTTCCCATAGAGCGGACACGTGTTGTTTACATACACGTCATCAGGAAATAAAACTACCTGCGTCAACATGATCCGACAGGATTCTCAGGGTGAAGTGCCATTATTTCATGAGGACGAAAATGCATTTAGAGAGAAGAAATCAAACATCAAACATCCTCTGGCCTGCTTCTTTCACCTCTTCTTCCGCACAAGTGCCATCCTGATTTACCTCTTTTGTGAGTTACTCAGCCGAAGTTTTATTGCCAACATGGTTACCATCATTTTACTCCTCTCATGTGACTTCTGGACAGTAAAGAATGTGACAGGACGGCTGCTGGTGGGCTTGAGATGGTGGAATCAGGTTGATGAAGAAGGTCGCAGTCATTGGATGTTTGAATCTAGACCGGAGAGCAGTAAGAATGTGGTCTCGAACTCTGAGTCCCGGGTTTTCTGGTTTGGTCTGGTCTTGTGTCCCGTGTTTTGGGTTTTCTTTGTGTTCAGCTCTCTTTTCTCCTTCAacataaagtggctgGCGGTTGTGATCATGGGAGTTGTGCTGCAGTGGGCTAACCTATATGGATATGTGCGCTGTAAAGTAGGTGGTGGAAAAAACCTGAAGAACATGGCAACAAACTACTTGGGCATTAAGCTCTTTAATAAGGTAACAGTAGAGAAatgctgtatataatataaatattatttaataacacaTATTATAATATTTGCGCTGTACATAACATAATCCTGTTCTTAATTCTTCTACAGGTACTAAACAAAACAGAAGAGCCCTAAAGTGAATGACTGATGTTTACTGATTAATACGTTTATTTTCCTACTAACATTTGTTCAAGTAATTTGTCTTTTagtatcatttttattttgtaaaacattcTTTTCTCTTGTTTACACTTGAATAGCTTTTCTTTTTGGTTAAATTGATCTAAAATTGTGTTGATTATgttattattcataaaataaatcatctttatttacaAATGCAGTGTGATGTGTTTCTTCACTTTGTCCCCAGGTGTCACTGTGGCTCTGtg
>TCONS_00052191
ttacacacatattgtttgctatatggaatgcaaaaactttgaagctcatttagaatgcagatagaagCTTATAATTCCAAGCTGAAATGTCAACAATGTTATCAACCAGCTCTGTGATAAAGGGATGACAATAAGACATGATGATAATAAGATATTATATTAGCGTCACGATTTTACGTAAATAACGTCATATTGTGTAAATCTGACCAGACAAATGGAATGTTGacttactttgaatcttttgagTTGTTCTCATTCCTGaattagtttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttttctcgaCAGAGTTGTCATAAGATGATTTTTCCAACCGTCAATTCAGGTAACCGACCAATCACAATCGTTTTTGAGTGATACGAAAATCatcaattagaaaaaaataaataaacattttaagatttCTGAGGTAGGTCGTGTAACGTTTTTCGTAGTTTATATAATGTGATAAAACATCTgcaataagataaaaaaaagtcATTGGATGACATGTGATGAACTGAATTATGAGCCACCGAACGCCCCCTAAAGGAAGACAATGAAATTCTTTATCAGTAAGGTTTGTTTCCCATAGAGCGGACACGTGTTGTTTACATACACGTCATCAGGAAATAAAACTACCTGCGTCAACATGATCCGACAGGTGAGTTTTCACTTATATTTCCTTTAAAGAAATATGTTATGATCCCTATTTATATTAAGTTTATCTATCTCTAGAAGATGCAATATTAAGGAAACTGTAACTATACAAACATAACTGCCGGCTGTGTAGAGCTGAATTCTTGACTGATTCAATGTTTATTTTGAAGGATTCTCAGGGTGAAGTGCCATTATTTCATGAGGACGAAAATGCATTTAGAGAGAAGAAATCAAACATCAAACATCCTCTGGCCTGCTTCTTTCACCTCTTCTTCCGCACAAGTGCCATCCTGATTTACCTCTTTTGTGAGTTACTCAGCCGAAGTTTTATTGCCAACATGGTTACCATCATTTTACTCCTCTCATGTGACTTCTGGACAGTAAAGAATGTGACAGGACGGCTGCTGGTGGGCTTGAGATGGTGGAATCAGGTTGATGAAGAAGGTCGCAGTCATTGGATGTTTGAATCTAGACCGGAGAGCAGTAAGAATGTGGTCTCGAACTCTGAGTCCCGGGTTTTCTGGTTTGGTCTGGTCTTGTGTCCCGTGTTTTGGGTTTTCTTTGTGTTCAGCTCTCTTTTCTCCTTCAacataaagtggctgGCGGTTGTGATCATGGGAGTTGTGCTGCAGTGGGCTAACCTATATGGATATGTGCGCTGTAAAGTAGGTGGTGGAAAAAACCTGAAGAACATGGCAACAAACTACTTGGGCATTAAGCTCTTTAATAAGGTAACAGTAGAGAAatgctgtatataatataaatattatttaataacacaTATTATAATATTTGCGCTGTACATAACATAATCCTGTTCTTAATTCTTCTACAGGTACTAAACAAAACAGAAGAGCCCTAAAGTGAATGACTGATGTTTACTGATTAATACGTTTATTTTCCTACTAACATTTGTTCAAGTAATTTGTCTTTTagtatcatttttattttgtaaaacattcTTTTCTCTTGTTTACACTTGAATAGCTTTTCTTTTTGGTTAAATTGATCTAAAATTGTGTTGATTATgttattattcataaaataaatcatctttatttacaAATGCAGTGTGATGTGTTTCTTCACTTTGTCCCCAGGTGTCACTGTGGCTCTGtg
>TCONS_00052194
ATACACGTCATCAGGAAATAAAACTACCTGCGTCAACATGATCCGACAGGATTCTCAGGGTGAAGTGCCATTATTTCATGAGGACGAAAATGCATTTAGAGAGAAGAAATCAAACATCAAACATCCTCTGGCCTGCTTCTTTCACCTCTTCTTCCGCACAAGTGCCATCCTGATTTACCTCTTTTGTGAGTTACTCAGCCGAAGTTTTATTGCCAACATGGTTACCATCATTTTACTCCTCTCATGTGACTTCTGGACAGTAAAGAATGTGACAGGACGGCTGCTGGTGGGCTTGAGATGGTGGAATCAGGTTGATGAAGAAGGTCGCAGTCATTGGATGTTTGAATCTAGACCGGAGAGCAGTAAGAATGTGGTCTCGAACTCTGAGTCCCGGGTTTTCTGGTTTGGTCTGGTCTTGTGTCCCGTGTTTTGGGTTTTCTTTGTGTTCAGCTCTCTTTTCTCCTTCAacataaagtggctgGCGGTTGTGATCATGGGAGTTGTGCTGCAGTGGGCTAACCTATATGGATATGTGCGCTGTAAAGTAGGTGGTGGAAAAAACCTGAAGAACATGGCAACAAACTACTTGGGCATTAAGCTCTTTAATAAGGTACTAAACAAAACAGAAGAGCCCTAAAGTGAATGACTGATGTTTACTGATTAATACGTTTATTTTCCTACTAACATTTGTTCAAGTAATTTGTCTTTTagtatcatttttattttgtaaaacattcTTTTCTCTTGTTTACACTTGAATAGCTTTTCTTTTTGGTTAAATTGATCTAAAATTGTGTTGATTATgttattattcataaaataaatcatctttatttacaAA

Function

symbol description
zgc:112148 Predicted to be involved in protein secretion and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane.

GO:

id name namespace
GO:0009306 protein secretion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-235 Predicted to be involved in protein secretion and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane.

Ensembl:

ensembl_id ENSDARG00000001804

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052193 False 1714 mRNA 0.36 6 56861059 56871984
TCONS_00052192 False 1652 mRNA 0.36 6 56861059 56871984
TCONS_00052191 False 1818 mRNA 0.35 5 56861059 56871984
TCONS_00052194 True 841 mRNA 0.39 7 56861112 56871330

Neighbor

gene id symbol gene type direction distance location
XLOC_026836 stk19 coding downstream 243962 56601829 ~ 56617097 (-)
XLOC_026833 cyth1a coding downstream 286094 56408840 ~ 56574965 (-)
XLOC_026835 SMIM10 coding downstream 291091 56565300 ~ 56569968 (-)
XLOC_026834 CU855917.1 coding downstream 448036 56411141 ~ 56413023 (-)
XLOC_026832 FQ311920.1 coding downstream 505093 56354644 ~ 56355966 (-)
XLOC_026838 ush1ga coding upstream 10848 56882832 ~ 56896702 (-)
XLOC_026839 hid1a coding upstream 50006 56921990 ~ 56933578 (-)
XLOC_026840 NA coding upstream 165110 57037094 ~ 57037670 (-)
XLOC_026841 socs3a coding upstream 551153 57423137 ~ 57425961 (-)
XLOC_026842 cyth1a coding upstream 590244 57462228 ~ 57530323 (-)
XLOC_026831 NA non-coding downstream 1021545 55838454 ~ 55839514 (-)
XLOC_026814 NA non-coding downstream 1976879 54873401 ~ 54884180 (-)
XLOC_026812 NA non-coding downstream 2040159 54791553 ~ 54820900 (-)
XLOC_026811 NA non-coding downstream 2076738 54748396 ~ 54784321 (-)
XLOC_026851 CT583687.2 non-coding upstream 1185630 58057614 ~ 58059819 (-)
XLOC_026854 NA non-coding upstream 1236447 58108431 ~ 58110154 (-)
XLOC_026858 CABZ01038493.1 non-coding upstream 1338321 58210305 ~ 58217276 (-)
XLOC_026860 NA non-coding upstream 1420325 58292309 ~ 58296549 (-)

Expression


Co-expression Network