CI01000113_00013132_00029627 (RAVER1)


Basic Information

Item Value
gene id CI01000113_00013132_00029627
gene name RAVER1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 13132 ~ 29831 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_00013132_00029627.mRNA
CCTTTGTGACGCTACTGAACGGTGAGCAGGCCCAGTTTGCGATAAAGGAATTTCACCAATATGTTCTCCGTGACCGTGAGATCTCTGTGCAGCTGCAGCCGACAGACGCTCTGCTATGCATTGCCAACCTTCCCAGGGCTTTCACCCAGCAACAGTTTGAGGAGCTCGTCCGCCCCTTTGGAAACATTGAGCGCTGCTTCCTGGTGCACAGTGGTGCCACGGGCCACTCGAAGGGCTATGGCTTTGTGGAGTATATGAAAAAGGACTCAGCAGCCAGGGCGAAGTCAGAGCTGCTGGGGAAGCAGCTTGGTTCACGTATGCTGTACGTGCATTGGACAGAGGTTGGATCGCTCACGTATCCCATGCTTCACTCGCGCTGCCTCTGTGTGGACCGACTACCTCAAAACATCCTCACCGCTCAGGATCTCCGTAGTGTGTTGACTGACACGCACGCTCCTATATTTTGCCAGCTTGCTCAGGGTCAGGATTGTAGTTTTCGACGGTTTGCTGTGATGGAGTTCTCCACACCTGAGATGGCTGAGGATGTTCAGCGGCTGACTGATGGAAGATCTGTGGCTGGGACTCACATACGTGTCTCCTTCTGTGCCCCAGGACCACCAGGAAGGAGCATGTTAGCTGCCCTCATCGCCGCCCAGACCATGGCTTTGAACCGAGGTAAAGGTCTCCTTCCTGAACCTAATGCCATGCAGATCCTTACTGGCCTCAATAACCCTGCCACGCTAAAGATGATGTTGGCATCTCTCAACCCGGGACATAAGCAAGGCCTGCTGGGAGCTGCACCCGCCGTACCTCTGCTGGCCAACCCTGCTCTCTCTGCTGCCCTTATGCAGCTGCTGCTCCAGAACCAAGTCCAACAGCAAGCTCTTTTAGGGAATCCTCTTCTTTGGGCACATATTCTGCACAATAAAGAGTACAGTCTCCTTCCTTGTGTGAGTGGTTCCTCTGTGTGGGCTGGATTACTGAGTGAAAATCCTCTGGCTGCTCTTCCTCTCCAACAAAGCATTAACATGCTGGGAGAGATGCCTCAAGGTGCTATTGCTCCAACACTGGGCTTGCAGAATGAGCCCCTTGGTCCCATCAAACAACCATCCCTGAGTCGACCTCTTGGGAGGGAGACCGAGACCCCAGCCACCCCAATTGGCTTTCCCCCAGCAGCCTCTCCTGCACTGCAGGGAATGAGCTTGCCCCTCCTGACTGGGATGTTAGGAGCAGATGGGCCGACTCTACCGGGGGTGTCTATATTGGGTGAGCCTCCCAAAGAAGTTGGTGTATCCCAGAATCCCTTTCTCAGTGCCCCTAGCATATTCCCTTCTTCAGGTGCCAGCACCAGAGCTCACCCCTACAGGAAGAAAACAGCGATTGGAAGCATGTCTAACCAACGCACAAACCACAGCATCCACTCAAACTATAGCCTGCGCTTCCAAGAGTCTTGCACACCAGAGTTTCCTCCTCTGCACCAGGACCCCTTGTCTCACTTGTATGAACAGCAGGATGTTCTGGAAAATGCAGCGATTCCTGGCTACGGTTTGCAGCTCTCCAGGCATGCAGGCTTTGGGGATGCAGGCTCTCCTTTCAGCTATCCACCCAGCCCCCCTCAGTCTTCTTATTTCAGCTTTGGTGCCCATACTAGCATCCCCTCCACCCAGCTCAATAAGGCTGTTGGAATGCCTCCAGTGACTCATTCCAGCCTATATCCTGCTGCACCTGGTGCTGGTATGAAGACTCCCATCGGCGGGCAGAAGCGTCTGTTCTCCCGTCTTATCCCGTCTCCAGAGCCCAGTCCAGAGGGTGGATATAGTGTGAAAGAGCAGTGGACCGTCATTGAGTTCACTTGGGAAAGGAACAAACAGGAACCAGTGGAGGACCCTGCAGCTCAGATGATCGGTCACATGGATGATTGCTGAAGTTTGTGTATATAATTTCAATGTGTATGTAAATAGTTTATTTTTTATTTGCCATTTTAATTTTGTTTTAATTTTATTTTTGTAAACCCAAAGATGCAACAAACACCACAACGAAAGGAAAGGGTTCCTGTCTTGTTCATCTGAATAGTCCTATTTTGTAGGCTTTTTTTTTTTCCATTATTGTTTTAATTTGATTTATTTTGA

Function

symbol description
raver1 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleus. Orthologous to human RAVER1 (ribonucleoprotein, PTB binding 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_00013132_00029627.mRNA True 2129 mRNA 0.51 14 13132 29831

Neighbor

gene id symbol gene type direction distance location
CI01000113_00003487_00012253 TYK2 coding upstream 879 3406 ~ 12253 (+)
CI01000113_00047746_00048681 NA coding downstream 17803 47634 ~ 49457 (+)
CI01000113_00081245_00102196 PDE4A coding downstream 50769 80600 ~ 102729 (+)
CI01000113_00107024_00115240 PRKCSH coding downstream 74286 104117 ~ 116104 (+)
CI01000113_00160200_00207259 NA coding downstream 130369 160200 ~ 207259 (+)
CI01000113_00256900_00257501 BA2, BA1 coding downstream 226596 256427 ~ 257594 (+)
G331295 NA non-coding downstream 3737 33568 ~ 33807 (+)
G331300 NA non-coding downstream 6432 36263 ~ 36479 (+)
G331307 NA non-coding downstream 20004 49835 ~ 50225 (+)
G331308 NA non-coding downstream 20533 50364 ~ 51150 (+)
G331309 NA non-coding downstream 21650 51481 ~ 55526 (+)
G331260 NA other downstream 304327 334158 ~ 334621 (+)
G331470 NA other downstream 883561 913392 ~ 916537 (+)
G331487 NA other downstream 887904 917735 ~ 922133 (+)
G331615 NA other downstream 1216460 1246291 ~ 1246573 (+)
CI01000113_01424978_01425704 NA other downstream 1394730 1424968 ~ 1425835 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location