G331260


Basic Information

Item Value
gene id G331260
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 334158 ~ 334621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU376556
TCTGCGACTGGTGTGGGGCGGAGAGTGCGAGTATAAATAAAAACCCCTCGCGCATCTAAGTTCAGCATTCACACTTGTTGAAAAAAGAAGAGATAATCACAATGGTGGAGTGGTCAGATTCCGAGCGCAATACTATTGCTAATGTCTGGGGCACAATCAACGTCGATGAAATCGGACCCCAGGCTCTGGCAAGGCTGCTGATTGTATATCCCTGGACTCAGAGGTATTTCGGTGCCTTTGGAAACCTTTCCAGTGCAGCTGCAATCCAGGGCAATCCCAAGGTGGCACAACATGGTAAAACTGTGCTAAATGCGTTGGAAAAAGCCGTGAAGAACATGGATGACANNNNNNNNNNNNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU376556 True 358 TUCP 0.46 2 334158 334621

Neighbor

gene id symbol gene type direction distance location
CI01000113_00326077_00326875 BA2, BA1 coding upstream 7190 325609 ~ 326968 (+)
CI01000113_00297682_00298306 HBAE3 coding upstream 35792 297601 ~ 298366 (+)
CI01000113_00287299_00291120 KANK2 coding upstream 42942 286567 ~ 291216 (+)
CI01000113_00285871_00286497 NA coding upstream 47615 285800 ~ 286543 (+)
CI01000113_00256900_00257501 BA2, BA1 coding upstream 76564 256427 ~ 257594 (+)
CI01000113_00342143_00354071 NPRL3 coding downstream 7111 341732 ~ 354302 (+)
CI01000113_00370404_00370736 NA coding downstream 35783 370404 ~ 372984 (+)
CI01000113_00428584_00446187 RHBDF1, RHBDF1A coding downstream 93639 428260 ~ 446644 (+)
CI01000113_00455243_00457236 NA coding downstream 120254 454875 ~ 458694 (+)
CI01000113_00524568_00527858 NA coding downstream 189255 523876 ~ 528298 (+)
G331263 NA non-coding upstream 9228 254754 ~ 324930 (+)
G331282 NA non-coding upstream 114925 117641 ~ 219233 (+)
G331309 NA non-coding upstream 278632 51481 ~ 55526 (+)
G331308 NA non-coding upstream 283008 50364 ~ 51150 (+)
G331307 NA non-coding upstream 283933 49835 ~ 50225 (+)
G331344 NA non-coding downstream 32022 366643 ~ 366908 (+)
G331347 NA non-coding downstream 40697 375318 ~ 375584 (+)
G331349 NA non-coding downstream 54220 388841 ~ 389074 (+)
G331290 NA non-coding downstream 70755 405376 ~ 409012 (+)
G331470 NA other downstream 578771 913392 ~ 916537 (+)
G331487 NA other downstream 583114 917735 ~ 922133 (+)
G331615 NA other downstream 911670 1246291 ~ 1246573 (+)
CI01000113_01424978_01425704 NA other downstream 1089940 1424968 ~ 1425835 (+)
G331767 NA other downstream 1328164 1662785 ~ 1663255 (+)

Expression


Co-expression Network