G331282


Basic Information

Item Value
gene id G331282
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 117641 ~ 219233 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU376578
TTTTTCTGGCATGTAAAGTACAAATAATTAAACAATTCCATGAAAAAGTCCTCAAGCGTCTTCAGCTGAAATCCCAGTAATAAATATCCTAAACTAAACTGAAAGGTTTATTTATTTTTTCCCCTTTGTTGTGTGTTCGTCTTTGTTCGTTTGTTCATGTTTGGAAGTATGAGATTTTTATTTGTGACACACAGACACTGAGATCAGGAGTTCTGCTTTTGATCGTTTTTTTATTATTATTAATATTATTGTTCGTTTGTTTTATTCTGTTATTGTTCTGTTATTCCTGGAAAATGGTTTCAGAAGAACGTTGCTAAGTAACTCTGTGTCCCTCCTAAATTACCTGACACAAAATACAACTGGTTGAGAACAGAGTGACCACTGACCCCTTTATCTAGCTCAGCGCCTCGCCTGTCCCGTCTCCCCCGCTGCGCTTTCTCCAGCCACGTCTGCTAATTATTGAGTCCTAGCCCCCCAACTGACTCTTTTATTTCCTTGACTGCTCTCTCAGTCGGTTTCACGGCTCTGTATGGCAGCGGGGTGAGGGGTGCTTGGCGAGGGACGCTGAGCCTAAGGCCTGGCTGCGGGACCAGACCGCGCCTCGGCCCGCCACCCCCCCCTTGCCCCAGGCCTCGCCCCGAGCCCTGATTCACTATGGGGTTCTGAACGTGGCTGGAAAAACAAGACTGTGATTAGATTAAATAATCAAAACGTTTTCATTTAACAAGACAAACAAAACACAGGCATTAAAGGCATAACATCTAGCACACAGCATGTATGTTTATACACTTCAATTAGTTTAATATAGCAGTGCATTCTTTGCCTATGGAGAACTTTTCCCAAATTGTAATTCTAAAGCAGTTTTTTTTTTGTTTTTGTTTTTTTTTATTTTCTTTTTTAATCTATTTGTTCCCTTTAAAGAAAAACAAAAAGGTGTAACCACATTTTGGCAAAATGAAAAGTATTTAAACTTGCAAATATAATGAAATAAACCATAAATATACACAAAACATACTTTCATACGAGGCAATAATAATAATCATAATAATGATAATAAATAGTTTTTAAGTTAACAATAAGTTAAAACTACAAGCTTAAAGTCGCCCAAATAATACAAGTTCATTGGCGCTATATTGATTTTTTTTTTTTCAGTTTAAATTATTTATGTTGCAACAAAAGCTACCACAGACTTTTACAAACACAATTAAACACATTTTGATTGAAAAGAAATAATTCTAACTAATTCTAAAACCTGCATACACTGTAAGAACGGCAACTAATTATAAATAATGGAAACAAATATAAGAAATCGTACCCAATAAAAGGAAACAAAACGAAATATTCGACCCACGTGTGTGTCCTCTATGGCAACATCAACAACACAAATACGCTAAGTTAACGTGTGATTCTGATATGTAAAGGAAATCAATAAATTACAGGAAAAATGATACTCTGAAATCAACATGGGCTAAAACCGATGATATTTTAGACGGTATTCCTTTCACTGTCTTTTAGAATTGCTCTTATTGGTACCATAGACGGCTGTTTGTTTTAGCTTGCATGGTCAGAGCACTAATAAGGGGGCGGAGGAAGGGATAATGGACGTTTTTAGAGACCAGAGCTCTTGGTGCTTGTTTGATTCTTCTAATGAATCTGTTAGTTAACACTTTTTTTTTCATTTTGTTCATTTTGTTGTTGTTCATTACATTTGATCCTTTCACTATTCTGCAAACCATTTCAGTGTGACGTTTAATTTCTTTTTTAAAAAATATATATATCTTTTGTTCTCAGTCAATATAAAAACGAAGCACATTGCACTTACTGTTCCATAGGAAAGTTTTTTTGTCTTTTTTTAAAATGATTATTGTAGTTGCTCAAGCGGTGCAGTATGTTTGTTTCCTGCCATTGTCCTTGGCTCTCAGAGGGAATGGGGGAAGTGGTGTAGCTAAAGGGTTCGTTGGGACACTCAGCCAGAGGGACGACGCTAAAGACCCCCCCCCTTTCGGACGCCAGGCGCACTACTGGGTTGCCCTGGTCACTGTATCTACCCCGTCGCTCATTTTTAGAGGGTGGACGAATCTTTACATTTAGGATTTTTTGTCCCCTCTAGGGCACACCACCGATGAGTTCCAGGATGAGTTGCGTTAGCGTTAGCGAAAGAATAATGTGTTGCGATGTTAATGTGGTGTTGTAAGCTGAGAGGGGTTTCAAGGTGTATCACAGTTTTTATACAATGGGAATGGAAAGAGCTTAGAGACACTTTGATATGTTATAATGTGTGTGTGTGTGTGTGTAAGTGTATATGTATGTGTGTGTGCGGTCACACTCTTGCTAATTGTTTCGGACTGACTTTTTTTCCCTTCATCAGTGACAAAGCTAAGATCCCTTGGTTGGTTAGTGCTTGTGCAAAGGAGCAAAATCAGGTGTTGACGATATGATGGTGGAATAGAGAAGATATGTGTAGCAGAAATTAAATAAACAAGAAAAAAATGTAGACAGTACAATGATAGACGTTTGCCTTGTGTGGTGACTAACTGGCGAATATAATTCACAATGGATTATTGTGTGAGATTTGATTACATTGATAAGTGCAGCTACATTGTATTATGTCAAATTTTCAACCTTTTTTGGTGCACTGAAAATGCTGAAGCGTTAAGGTGATTCTTCGTTTTCGTTTTTTTACCGATACGAGATGAGATGCTCTGGGTTTTCAATGTGACGCCATTTAGAGCTTCACTGCACCGTCATTGAAGCAACATTTTTCACTTTAGAGAAACCGTAGCGTCTTTTTTTTCCTGCGTAATGCATACATTTACCTGTCTGCTGATTCTTTTTTTTCTTTTTTAATGTTTCATATGTTTCTCTTTTTTTTTTTTGTATTTTTGAAAATGAAATGGTTTCACTGCATGTAAGTCTTAGTCCCCAACCCTCCGATCCCCTCCCTTACACCGCAGACTGGCCCTCTCTCCCCAAAGTTGAAAACTCTGAAAATAAAAGCCATGCGGTGTGTCCAAAGATTTCCACGATTTAAGAATCTGTAAAAATGTCGCACAAGGTCTTGTTTTTTTCGTAGATATAAAAATATATTAATCTCTAATGTAATCCTTTCAAAGAGATCATTGTCCTCTTTGGCTAACACAGCGTTATTTAGAAAAGCAAAATGTCACTTGATTTGAACACATTTACATCTTTCAGTTCTTTTCTTCATATAATGTGAAGTTTTGCGATTTTTACAGCAATGTCTCTCCCCATGGAACAGTTTAGTTTGTTTTATCACAGGGCTGTGGACAGCTTGGGCATTGTTGTTACTCAACTGTATCTAGGGATTTTTTCATTTATGAGATGAGTATTTTGAGAAAAGATTCTTTTTGTAGCTCGTGTGGCTGCGACTTGCTTAAAAGGGCCTTGAGGACACAAAATTTGATTTTATGTTTTGATATGTAGCTGTTTAGATGTGCAGGGGCTGCTAAAACCAGTTTGGGAAAAGCGAATTATAATGTGATTCTGTTTAGTGAATGGAGCTAAATGTATCTGAGAAGTTATGAAGAGCAAGGGCGACCAATCCCAGTGGCCCCTGACCTCCATAACGGCTCACATGTACGTCTCAAAGAGCCTTTCCTACTCCCGAGCCATTCAAACCTGTTTAAAATGATCTAATATGGTTCTGGATTTTGCGTTTGGACTTTATAATTGGTTTGAAAGACTTTCAAAAGAATTCCAAATGCCATCGCCATGGGAACACTATCGAAAAATGCCCCTAGTTACACAGACATCTGCATGTGGTGGAATCGATTCTAAATTCTAACTATAAAACTCAGAGTGGAAAGATAGGAGGAGATTCTAGGTCGCCATGTTTTGTGAAGTTTCGCTATGCCCTCCAGTGGAGGTACGTATGTGCGAGTGTGTGTGTGTATGTGTGTGTTGGTGTGCTAGTGTCTCTGTGATGAAAGTTGTCTTTCGGTGTGCTGAGGTGATTGTGATGACCCCCGGGTGACCTCTCGATTTTTGACTACCATCCACACAGTTTGTTCAGTTGCTGTTGGGTTGGACCTCGAGTAAGATGTGTGTTTGGTGCCATAAGGCAAGGTTGCAACCTAATGTAGAGCCAGGAAACCGTATTCAAAGTTCTAGAAAATGCTTACATTTTTGGCTATTATAACCACCTTAAATGTTGAATATATAGTTATATCATAATATATATGAGAACACTGTTTTTAATCATTTTTCTCTAAAAAAATCACTGATTCAAAATGCCCAAGTGTAAAAAAGTGACTACATCCTCTGAAGCCAGACAGGAGAGTTACCGGGGCAATAGTTTGGGTAAATTGCACATATTTGATTTACTTTTTTTTTTTTTTCTTCTGTTGACCAGTTCTTACTTTGCCTGAATTCAATTAAATCTCTGCAGACATTCTCTGTCACATTCATTAGACTGTCCCTCCTCTTGGATTTCCCCAGCCTTGCCTCGCACCTCTGCTAATTCAATACAGGCAAACATTGGGAAGGACTAGCATGTTGTGTTAAGAGAAAAGAAAAACGACTCTACTTGTGTATTTTTGTTCGAAACAACTAAACGTGTGTGTGTATGTGTGTGTCAAATGTGTGTTAGAGAGAGACTCAGTCCAGGCCCATGTAGAGTGAATGTACAGGGAGCTCAGTAGCTCCCCCTGCATGTTAAAGAGCAGTAGTGACTAGGCCTTCCTTCAAGCCTTGTGCTGCTTGCTGGTCTTGAAGGAGACCTGCAGGACACGGTCGCCCAAGCGGTAGCCGTTCAGGCTGGCGATAGCCATGGCTGCCTCGTCGTAGTTGGTCATGGTGACAAAGCCAAAGCCCTTACATTTGTTGGTGGTGAAGTCACGGATGACCTTGACGTTTGTGACGGCGCCGAACGGCCCGAAGAGCTGCCACAGGACGCTTTCGTCAGCTTCCGGGGACAGGTTGTAGACGAAGATGCACCAGCCAGCTCCAGTGGGCCCGGTCAGGTTGACGCCGGCTAGACTGGTCATGCTGTCAATGGTTATTGGGGAGAATCTGGGGAGGAAAGAAGGAGAGCTACCATGGGTGTCATTCTGAAGTTCAGCACAGCGTGCTTCTCATTACCACATTTTTTTGTCTCTTTGAGGAACGGATACTCGATCTCCACAGCCTTAAGCATGTAAGAAAATGAGCAGCTATCATATTATCTAGTCATATTCTCAGGTGACCAAACCAAACTAGTCATATTCCCTGTTAGAAGTAGGACACATATTTCACAATGTTCAACAAAATCACGATACTTAGCAAAACAGAAACCTAGAGAGGGATGAAGGCAAATCAGAAACAAATCAACAGAAAATTGGAACTAATAGAGGAGACGCAAACGGAATCTTGTATGTCCATGCTGGTGGAAAAAAGAACATTAAAGCAACCAAAACTGAAGAAAAAAAATAATGTTAGTTCAATACAGAAATACAGTTCAATCAAAGAATCAACCAAAAGAACAAAAAGGTTCAACAAAGCCATGCCAGAATGTCCTGCTGTGATATCAGCTATGTCAATCTAGTCTACTGAAACGGTGTTTTCTCAAATCAAATCTCTAAGGTTAATGCTTAAGTCAGCAGGTGGTATTCCGGGCACTTTGTTTGAGCTTGTTTAGGCATGGATGCTTTTGAAAAGACACCTTTTTTTGAAATTACCTCTTAACTCCGTAGCTGGCGTTTAGTAAATTGTCGAGTCTGCAATGCAAGAGGGAGAGTGACGGAGGTGAAGATATTAGTTGCAAGATCCAACAACCAGAGCAAAGCGTTTTCATGGAGCCACTTCAGCCACCAGGGGGAGCCCTTTACTGGGCACCGCATCCACCAATCGTCAGGCGCGGCTCGCCCATCGCACTGACGCAGTGCTTACAGAGCCCTCAGGCGATGGATCGAGAGTACTGCGCGTATGTTTGTGCTGCGATGAATGCTTCTGAATGCATCTGTGCCATGACTGATTCACACACACTGTGTTTTATCTCTAAACAGGGCAGTTCTTTTAAAAATTTACACACTGACTCAGTTAGACTCATTGTGATTTGTCAATCCCCCTGATGGCGTGAACGTGCTGCGGTTTAAAGGAAAACCGGCAGAGGAAGACTAGGGAGCGGCAGGGCTTCGGGCTGTGGGTGGGGGTAGTACCTGAAGCGCTGAGTCTGGTGGTGCAGAGGGCCGGTGTAGCGGCGAGCAGCTGTCTGGTAAAGCTGGGTAAGCAGGGCCTGTCCCGTCTTCTGACTGGGGTTGTTGGCAAACTTCACGGTGATGGGCTCGGCGGCACCCAGCGGCTTTTGACCGTTCAGGCCTTTGATGGCCTCCTCTGCCTCATTTCGCTTGTCGAACCGAATGAATCCTACTCCGCGCGATATACCTGCTCCGGACAGAAAGCGAAGTAATGTAAGCACCGTGAATTAAATTAATGGCAGATAAGTGACTCACGTGGTCACAGGGATAAACCAGGCCTTATGATCTACTTTATAAAGCAGACAGAGAAAAATTTTAACATAAACATGATTTTACTGTTAGGAAACCATCTCATTTCCATAAAGTGACATACTACTGAGTGAAACAGGATACTTAGAGAGGAAAAATATGGGCGGGACTTCCAATGGGAATTTGGCTTTTGGTTAAAGTGTTAGTTCATACAAAAATGAAAATTCTGTCATCGTTTACTCACCCTCATGTCTTTCCCCACCACAGCTGTCCCGACCACAGAGATGAATCGGCACCCCTTACATACTCGTGACCTTATTGCTGCTGCATGACACTACACTTACAACGTGTCTTTTTTGTTTGTCTCTTTCTTCTTTTAAGCATTTATATTCCCCCCCAGCTTCTCTGTATAACCTGTAATCCTGGTTCTCGCAGGAATTTGCCATTAATTCTTATTTGGAGGGGTAAATTTGGACGTCTGTGGTGATCCCTGTTGCCCAGCTCCACCCCACAGGCCGTTTCCTGTCGAAGGTCAGCACAATGACCAATGGCGTCGCGGCGTGTGTTTGTTCTGCTCCTGCTTCGACAGTAACGTGAGCAGGGAGAGGCCCCTCCCTGGGCCTTGAGCTTTGGCTTCAGGCCCTTGTGTTTCTGTTGATGCCGTCGTTTTCTCCATATACCACTCCCTAATGTAAAAAACAGCCCTGTATGTGGAGGGCATGCGGACACTTTCAAGCATTGGTCATAATTCTTCATAAGGTCCTGATCGGGACATTTCAGCAGCCCATGTATACATAGATAGCAGCAAGTCTGTTACATGACACCTAACCCAGCGAAAATGTCCCCAAAAGCACCACAAAACCTGAAGAAACGAGCGCTGTCATTCACAGAATTCTGTATGTTGTTCTTCCATGCTTGGATATCAACAAGATCTGTTTGGATTTGGACCACCAATAGAGAAGTATTCCAAAATGCCTCCCAAATTCAAGATAAGGAGGCAGAAAATGCCCCTGCATAATTAAAACTAAATCTATTACGGCTGTTGTGTTTAATGTGAAATGCGAAAATGATTGAAAAGTGTTGATTGCGCCATTAAATTTAGATCTTCTCAAGCTGCAACAGATTTCTTTTTAACGTGTTATTTTGCAATGTTTCTACTGAGCTTATGAATGCAGTGGCCAGTCAGATGCGTTTAGATTTGTTACGGCTTCATCAGGAGTAAAGGTCTGTTCATGTCCGATTACTGTAACTAAAGTTTTAATAATCATTCTAATTCTATGAGAATAGTGAAATCCTCACCAACTATAACGATAACGAAACAGAGAAACAATATTATTGGAATCACTTTCAGAACATTTTTTTTTCCAAGTTGATGAACCATTAAAACATTGACAGCCAATCAGAATCCACTCAAGCTCAAGCATTTGAAGCGTCAGACGAATAAACTTATAATAAACATAATGCGTGCATGCTTATAATAAAAATAACGTTATCATCATTTGATGTGGACACTAATATATACTGCCTGGCCAAAAAAAAAAAAAAAAGTCACTGTTTGGATTTTAAAAAGCAAATACTTAAGAATCTATGAATGGATCATTATTACAGTGATTATTATGTTTCTAGCATGTTATATGTTTGGCAACGACTCTTTTAACCCTAAAAGATGGAATGTGTAGCTTTTCATTTCTTAAACAACCATGTAGGAAGACACATTATGGCCATATTCCAGGATGACAATGTCAAGATTCACCAGGGTTAAAATTGTGAAAGAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU376578 True 8220 lncRNA 0.41 2 117641 219233

Neighbor

gene id symbol gene type direction distance location
CI01000113_00107024_00115240 PRKCSH coding upstream 1537 104117 ~ 116104 (+)
CI01000113_00081245_00102196 PDE4A coding upstream 14912 80600 ~ 102729 (+)
CI01000113_00047746_00048681 NA coding upstream 68184 47634 ~ 49457 (+)
CI01000113_00013132_00029627 RAVER1 coding upstream 87810 13132 ~ 29831 (+)
CI01000113_00003487_00012253 TYK2 coding upstream 105388 3406 ~ 12253 (+)
CI01000113_00256900_00257501 BA2, BA1 coding downstream 37194 256427 ~ 257594 (+)
CI01000113_00285871_00286497 NA coding downstream 66567 285800 ~ 286543 (+)
CI01000113_00287299_00291120 KANK2 coding downstream 67334 286567 ~ 291216 (+)
CI01000113_00297682_00298306 HBAE3 coding downstream 78368 297601 ~ 298366 (+)
CI01000113_00326077_00326875 BA2, BA1 coding downstream 106376 325609 ~ 326968 (+)
G331309 NA non-coding upstream 62115 51481 ~ 55526 (+)
G331308 NA non-coding upstream 66491 50364 ~ 51150 (+)
G331307 NA non-coding upstream 67416 49835 ~ 50225 (+)
G331300 NA non-coding upstream 81162 36263 ~ 36479 (+)
G331295 NA non-coding upstream 83834 33568 ~ 33807 (+)
G331263 NA non-coding downstream 35521 254754 ~ 324930 (+)
G331344 NA non-coding downstream 147410 366643 ~ 366908 (+)
CI01000113_00370404_00370736 NA non-coding downstream 151853 370404 ~ 372984 (+)
G331347 NA non-coding downstream 156085 375318 ~ 375584 (+)
G331349 NA non-coding downstream 169608 388841 ~ 389074 (+)
G331260 NA other downstream 114925 334158 ~ 334621 (+)
G331470 NA other downstream 694159 913392 ~ 916537 (+)
G331487 NA other downstream 698502 917735 ~ 922133 (+)
G331615 NA other downstream 1027058 1246291 ~ 1246573 (+)
CI01000113_01424978_01425704 NA other downstream 1205328 1424968 ~ 1425835 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025683 NA non-coding NC_007114.7 CM002887.2 46798512 ~ 46803047 (+)
tiger barb (Puntius tetrazona) G18638 LOC107703356,LOC107674672,LOC107754020,LOC107596819 non-coding NC_056701.1 CM032070.1 9901531 ~ 9908617 (-)