Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU376578 |
| length | 8220 |
| lncRNA type | read_through |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G331282 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000113 |
| NCBI id | null |
| chromosome length | 2886875 |
| location | 117641 ~ 219233 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU376607 | lncRNA | upstream | 62115 | 51481 ~ 55526 (+) | False | G331309 |
| TU376605 | lncRNA | upstream | 63465 | 53934 ~ 54176 (+) | True | G331309 |
| TU376604 | lncRNA | upstream | 66491 | 50364 ~ 51150 (+) | True | G331308 |
| TU376603 | lncRNA | upstream | 67416 | 49835 ~ 50225 (+) | True | G331307 |
| TU376596 | lncRNA | upstream | 81162 | 36263 ~ 36479 (+) | True | G331300 |
| TU376559 | lncRNA | downstream | 35521 | 254754 ~ 324930 (+) | True | G331263 |
| TU376643 | lncRNA | downstream | 147410 | 366643 ~ 366908 (+) | True | G331344 |
| TU376645 | lncRNA | downstream | 151853 | 371086 ~ 371393 (+) | True | CI01000113_00370404_00370736 |
| TU376646 | lncRNA | downstream | 156085 | 375318 ~ 375584 (+) | True | G331347 |
| TU376648 | lncRNA | downstream | 169608 | 388841 ~ 389074 (+) | True | G331349 |
| CI01000113_00107024_00115240.mRNA | mRNA | upstream | 1537 | 104117 ~ 116104 (+) | True | CI01000113_00107024_00115240 |
| CI01000113_00081245_00102196.mRNA | mRNA | upstream | 14912 | 80600 ~ 102729 (+) | True | CI01000113_00081245_00102196 |
| CI01000113_00047746_00048681.mRNA | mRNA | upstream | 68184 | 47634 ~ 49457 (+) | True | CI01000113_00047746_00048681 |
| CI01000113_00013132_00029627.mRNA | mRNA | upstream | 87810 | 13132 ~ 29831 (+) | True | CI01000113_00013132_00029627 |
| CI01000113_00003487_00012253.mRNA | mRNA | upstream | 105388 | 3406 ~ 12253 (+) | True | CI01000113_00003487_00012253 |
| CI01000113_00256900_00257501.mRNA | mRNA | downstream | 37194 | 256427 ~ 257594 (+) | True | CI01000113_00256900_00257501 |
| CI01000113_00285871_00286497.mRNA | mRNA | downstream | 66567 | 285800 ~ 286543 (+) | True | CI01000113_00285871_00286497 |
| CI01000113_00287299_00291120.mRNA | mRNA | downstream | 67334 | 286567 ~ 291216 (+) | True | CI01000113_00287299_00291120 |
| CI01000113_00297682_00298306.mRNA | mRNA | downstream | 78368 | 297601 ~ 298366 (+) | True | CI01000113_00297682_00298306 |
| CI01000113_00326077_00326875.mRNA | mRNA | downstream | 106376 | 325609 ~ 326968 (+) | True | CI01000113_00326077_00326875 |
| TU376556 | other | downstream | 114925 | 334158 ~ 334621 (+) | True | G331260 |
| TU376780 | other | downstream | 694159 | 913392 ~ 916537 (+) | True | G331470 |
| TU376797 | other | downstream | 698502 | 917735 ~ 922133 (+) | True | G331487 |
| TU376961 | other | downstream | 1027058 | 1246291 ~ 1246573 (+) | True | G331615 |
| TU376908 | other | downstream | 1205328 | 1424561 ~ 1425441 (+) | True | G331578 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00052768 | True | 4267 | lncRNA | 0.38 | 2 | NC_007114.7 | 46798512 ~ 46803047 (+) |
| tiger barb (Puntius tetrazona) | TU27812 | True | 6654 | lncRNA | 0.36 | 2 | NC_056701.1 | 9901531 ~ 9908617 (-) |
