RNA id: CI01000113_00003487_00012253.mRNA


Basic Information

Item Value
RNA id CI01000113_00003487_00012253.mRNA
length 2190
RNA type mRNA
GC content 0.48
exon number 13
gene id CI01000113_00003487_00012253
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 3406 ~ 12253 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAAATACGTGTAAAAGCTTTTTTTTTATCGTGTACATTGTTACATGTCTTTGACGCAGGTGTTAGACACAGTGTATAATGTCTAGACGAGGACGTACAAGAAGATCCAAAGCAGGGACGTCCACAGGACAGTGTGAGGGTCCTGGGGTCCATGTGTTTCTTTTCTGGACCAAAGATGGAGAGCGTTGCCTGTCTTACAAGGAGGGTGAGGTGACTGCAGAAGATCTCACCATCGATGCAGCAAAGGCTGTGGGGATCACTCCTGTCTGTCATGCCTTGTTTGCTCTCTATGATCCCGTATCCTCGTGTTGGTACAGTCCAAATCACAAATTTAATGCGGAAAACCAGTCTGGCCTGTTGGTGCATTTCCGAATGAGATTTTACTTCCGTAACTGGCATGGATTAGGTGAAAAGGAACCATTAGTGACTCGTCATGCATTACGGACTGGATCTGGAGCAGAGCAGGTGACGTGTCCTTTGCTGGAGATGACCTCCTTGGAGTACCTCTTTGCTCAGGCAAAATATGATTTTGTGAATGACTTGACATGTTTGGATGCATTGAGCGGAGAGGAAGAGATCAGTCGCTTTAAGAATGAGTGTCTGGGTATGGCTGTGCTACACCTCTCTTACACGGCCCTGCAGACTGGCACTTCTCTACAGGATGTGGCCAAGCAGACCAGCTTTCTCCGTTGCATCCCTCTATCTTTTTCCCGACACATTGCCCGGAACAATGCCCTGACAAGGTTCCGTATTCGCCGTGTGTTTGCAAACTTTGTGAGCAATTTCCAGCAGCACACAGTGGGCATGGGGAAGCTTGGATCACAAGAGATCATGTACAAGTATCTGTCTACGCTGGAGCGCCTGGCTCCTCATTTTGGCGTCGAGACATTCCCTGTGTTTCATCTTGACTTGAGAACTGATGGAGATGGCAGTGGGTCATACCTCATTGCCTCCAGAACACAAACACCCTCTGAGGAAACCGTAAACTGTGAACCTGCTTATGAGATCAGGGTGTCTGGATCAACCGGCATATGGTGGCGGAAGTTATCAGCACAAAAGGTGAATGACTACATTCATAATAAGAGCAGAGAGACACAGTCACAAGATGAACAGGAAATGGACAACTGGAAAACCTTCTGCGACTTTCCTGAGATCTCTCTGATTGCCATTCAGGGAGTAAATATCTGCATCAGTCGCCAAGACAACATGTCAATGGTAAACAGTCTGGACATGCATTTGGGCTCCAGTCTCCAGGCTCGCTCGCTGGTTTCACTGCTTGATGGGTATTTCCGCCTTACAACCGATGCACATCATTATCTTTGTCACGAAGTGGCTCCGCCCAGAGTGGTTCTTAGTGAGACCAATGATCTGCACGGTCCCATACTGGATGAGTTTGTGCTCCAAAAACTAAAGAAAGAACCAGAGGAGGGAGCGTTTATTGTGCGCTGGAGTGTTTTGGATTACCATCGAATAATCCTGGCATCTCTGAGTCAGACAAAGGAAGGGGAAAATCCAATATACAAACAGTTCCGAATTACCCAGAAGGGCTCCATGTTCAAACTGGAAGGCTGGGATCAAGAGTTCTCCAGCATAAAGGAGCTCACCAGTAGCTTAAAGACCTTCGTGCTGAAGTCTGGAGAAGACAGCTTCACATTGAAGAAGTGCTGCCTGCCCAGACCAGGAGAGTTATCAAACCTTCTCGTAATGAGAAAGGGTGCAAACAGTAGCATTAAAACTGTCTCTGAAACCCTCAACCTGAGCCAACTGAGGTTTCATCAAATTAAGGACAAGGAGATTACAAAGGAGCAGCATCTGGGACGAGGCACCAGGACTAACATTTACGCAGGCTGGCTGAAGATACACGGCTCACTAGAGGATGACGACAACGAATCCAATAACAATCTCTGCAACAAGAAAGGCATCCGGGTCGTCCTTAAAATTCTGGACCAGAGCCACAAGGACATAGCGCTAGCATTCTTTGAGACAGCTAGTCTCATGAGTCAGGTGTCCCACTGTCATCTGGTCTTTGTGCATGGCGTTTCAGTCAAGGGATCTGAGAACATCATGGTGGAGGAGTTTGTGGAGTTCGGCCCATTAGATGTGTTCCTGCACAGAGAGAAGGGCCATGTCACTCCTCAGTGGAAGTTTACTGTTGCTAAACAGCTTGCCAGCGCTCTTTGCTACCTT

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process

KEGG:

id description
K11219 TYK2; non-receptor tyrosine-protein kinase TYK2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376591 lncRNA downstream 21315 33568 ~ 33807 (+) True G331295
TU376596 lncRNA downstream 24010 36263 ~ 36479 (+) True G331300
TU376603 lncRNA downstream 37582 49835 ~ 50225 (+) True G331307
TU376604 lncRNA downstream 38111 50364 ~ 51150 (+) True G331308
TU376607 lncRNA downstream 39228 51481 ~ 55526 (+) False G331309
CI01000113_00013132_00029627.mRNA mRNA downstream 879 13132 ~ 29831 (+) True CI01000113_00013132_00029627
CI01000113_00047746_00048681.mRNA mRNA downstream 35381 47634 ~ 49457 (+) True CI01000113_00047746_00048681
CI01000113_00081245_00102196.mRNA mRNA downstream 68347 80600 ~ 102729 (+) True CI01000113_00081245_00102196
CI01000113_00107024_00115240.mRNA mRNA downstream 91864 104117 ~ 116104 (+) True CI01000113_00107024_00115240
CI01000113_00160200_00207259.mRNA mRNA downstream 147947 160200 ~ 207259 (+) True CI01000113_00160200_00207259
TU376556 other downstream 321905 334158 ~ 334621 (+) True G331260
TU376780 other downstream 901139 913392 ~ 916537 (+) True G331470
TU376797 other downstream 905482 917735 ~ 922133 (+) True G331487
TU376961 other downstream 1234038 1246291 ~ 1246573 (+) True G331615
TU376908 other downstream 1412308 1424561 ~ 1425441 (+) True G331578

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050544 True 4696 mRNA 0.46 24 NC_007114.7 46479913 ~ 46552107 (+)