RNA id: TU376648


Basic Information

Item Value
RNA id TU376648
length 234
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G331349
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 388841 ~ 389074 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACGGTCTTGTGGGCTTAACGGACACGCGCAAGCAGCGGGCATTGTAAGTCCACAAGACCGAAAGTGCACATGAAGTGTGCCATTTGGGACAGGGCCCTACTAACTCCCCTGACTGCTTTGTCGGATAAAATGGTGGATTCGGCGTCATGATTTGTTAGATCGCCTGTCAATCAAACTCCCGGCGAAGGGTCAATTGACTTAGCTCACTGAAGCTTACTGTATTAAGTAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376646 lncRNA upstream 13257 375318 ~ 375584 (+) True G331347
TU376645 lncRNA upstream 17448 371086 ~ 371393 (+) True CI01000113_00370404_00370736
TU376643 lncRNA upstream 21933 366643 ~ 366908 (+) True G331344
TU376559 lncRNA upstream 63911 254754 ~ 324930 (+) True G331263
TU376578 lncRNA upstream 169608 117641 ~ 219233 (+) True G331282
TU376586 lncRNA downstream 16302 405376 ~ 409012 (+) True G331290
TU376566 lncRNA downstream 100766 489840 ~ 513533 (+) True G331270
TU376572 lncRNA downstream 104782 493856 ~ 513062 (+) True G331276
TU376579 lncRNA downstream 109581 498655 ~ 505534 (+) True G331283
TU376652 lncRNA downstream 128212 517286 ~ 517757 (+) True G331353
CI01000113_00370404_00370736.mRNA mRNA upstream 15857 370404 ~ 372984 (+) False CI01000113_00370404_00370736
CI01000113_00342143_00354071.mRNA mRNA upstream 34539 341732 ~ 354302 (+) True CI01000113_00342143_00354071
CI01000113_00326077_00326875.mRNA mRNA upstream 61873 325609 ~ 326968 (+) True CI01000113_00326077_00326875
CI01000113_00297682_00298306.mRNA mRNA upstream 90475 297601 ~ 298366 (+) True CI01000113_00297682_00298306
CI01000113_00287299_00291120.mRNA mRNA upstream 97625 286567 ~ 291216 (+) True CI01000113_00287299_00291120
CI01000113_00428584_00446187.mRNA mRNA downstream 39186 428260 ~ 446644 (+) True CI01000113_00428584_00446187
CI01000113_00455243_00457236.mRNA mRNA downstream 65801 454875 ~ 458694 (+) True CI01000113_00455243_00457236
CI01000113_00524568_00527858.mRNA mRNA downstream 134802 523876 ~ 528298 (+) True CI01000113_00524568_00527858
CI01000113_00568754_00569821.mRNA mRNA downstream 179336 568410 ~ 570516 (+) True CI01000113_00568754_00569821
CI01000113_00574016_00587822.mRNA mRNA downstream 184381 573455 ~ 588082 (+) True CI01000113_00574016_00587822
TU376556 other upstream 54220 334158 ~ 334621 (+) True G331260
TU376780 other downstream 524318 913392 ~ 916537 (+) True G331470
TU376797 other downstream 528661 917735 ~ 922133 (+) True G331487
TU376961 other downstream 857217 1246291 ~ 1246573 (+) True G331615
TU376908 other downstream 1035487 1424561 ~ 1425441 (+) True G331578
TU377162 other downstream 1273711 1662785 ~ 1663255 (+) True G331767

Expression Profile