RNA id: TU376646


Basic Information

Item Value
RNA id TU376646
length 267
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G331347
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 375318 ~ 375584 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATCACAGGTTCCAAAAAAATATTAAGCAACACAACTGTTTTCAACATTGATAATAAATCATCATATCAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGAAATAAATTATATTTTAAAGTATATTAAAATAGAAAACCATAATTTTAAATTGTAATAATATTTCACAATATTATTGTTTTTTCTGTATTTATTATGAAATAAATGCAGCCTTAATGAGCATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376645 lncRNA upstream 3925 371086 ~ 371393 (+) True CI01000113_00370404_00370736
TU376643 lncRNA upstream 8410 366643 ~ 366908 (+) True G331344
TU376559 lncRNA upstream 50388 254754 ~ 324930 (+) True G331263
TU376578 lncRNA upstream 156085 117641 ~ 219233 (+) True G331282
TU376607 lncRNA upstream 319792 51481 ~ 55526 (+) False G331309
TU376648 lncRNA downstream 13257 388841 ~ 389074 (+) True G331349
TU376586 lncRNA downstream 29792 405376 ~ 409012 (+) True G331290
TU376566 lncRNA downstream 114256 489840 ~ 513533 (+) True G331270
TU376572 lncRNA downstream 118272 493856 ~ 513062 (+) True G331276
TU376579 lncRNA downstream 123071 498655 ~ 505534 (+) True G331283
CI01000113_00370404_00370736.mRNA mRNA upstream 2334 370404 ~ 372984 (+) False CI01000113_00370404_00370736
CI01000113_00342143_00354071.mRNA mRNA upstream 21016 341732 ~ 354302 (+) True CI01000113_00342143_00354071
CI01000113_00326077_00326875.mRNA mRNA upstream 48350 325609 ~ 326968 (+) True CI01000113_00326077_00326875
CI01000113_00297682_00298306.mRNA mRNA upstream 76952 297601 ~ 298366 (+) True CI01000113_00297682_00298306
CI01000113_00287299_00291120.mRNA mRNA upstream 84102 286567 ~ 291216 (+) True CI01000113_00287299_00291120
CI01000113_00428584_00446187.mRNA mRNA downstream 52676 428260 ~ 446644 (+) True CI01000113_00428584_00446187
CI01000113_00455243_00457236.mRNA mRNA downstream 79291 454875 ~ 458694 (+) True CI01000113_00455243_00457236
CI01000113_00524568_00527858.mRNA mRNA downstream 148292 523876 ~ 528298 (+) True CI01000113_00524568_00527858
CI01000113_00568754_00569821.mRNA mRNA downstream 192826 568410 ~ 570516 (+) True CI01000113_00568754_00569821
CI01000113_00574016_00587822.mRNA mRNA downstream 197871 573455 ~ 588082 (+) True CI01000113_00574016_00587822
TU376556 other upstream 40697 334158 ~ 334621 (+) True G331260
TU376780 other downstream 537808 913392 ~ 916537 (+) True G331470
TU376797 other downstream 542151 917735 ~ 922133 (+) True G331487
TU376961 other downstream 870707 1246291 ~ 1246573 (+) True G331615
TU376908 other downstream 1048977 1424561 ~ 1425441 (+) True G331578
TU377162 other downstream 1287201 1662785 ~ 1663255 (+) True G331767

Expression Profile