CI01000113_00770409_00789987 (OLFM2, OLFM2A)


Basic Information

Item Value
gene id CI01000113_00770409_00789987
gene name OLFM2, OLFM2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 770133 ~ 790683 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_00770409_00789987.mRNA
ACATACAATATAGATGGGAAGGGAAGATCAGAATAAGGGCGAGATGCTTCACACATTTGTGAGTGATATGGTGTGTGTGTGCCCCCCGTTCTCTATTCTGCCATTAGCAGTAGATGAGAGGAAATTACAGCAGAATGAATTGGTGGGTGGTAATGAGTCCAGGGGTGATTCTAATCAGTTCTTAAATTAAAACTCAACATTTATGCAACATTAATGAACAGAAAGCATAGTTATGAGAAAGCGCTGCTCCCCATTGGCCCCCCAGCCGTCGGATGGGCACACGTGCCACGCTGATGTTTAACATGTGAGGTGCATGTACCGCACTGATGATTGATGCGACAGTTTTATGCTCTTGAGGGGCTGCGGGTGGCAGATTGGCGTATAGATTGAGCCGAAGCTCGACGCTAACCGTATCTGACGTGCTCAGACACTAAGCCGTAGGTCCATCGGGATGGGAATGAGACTGATGATGAAATGTTAGGGTGGTAATACACTCGACTGGGAATCGAAGACCCAAGCAATAGCGCATTCTTTCAGGCCAGGGCGAGATACGCTTGGGCTGGTCTCATATCGGCTATGAGTGTTTAGCAGAGCGGACCGCCAACGCATGGAGCCGAAGCGGCAGACCCGTCCGTGCTGATCTCGCAGAGAAGGTTGGATTTCTGCATCAGCTCACCTGGGAAAATTCCATCCAGGATGGCAGAGCAGTTTCAGCAAGTGTTTTATGACAGTGACACGAAGCACAGAAAATCACTGCTAATGGAAGTGAAGACCTTGCTAGATTTGACAGCTGCTGAAAGCCAGACTGGACGGGAAAATAGCACTGTTCCCTTAGACAGCATTTATAACAGTATGTGGCATTCTTATGCAAATCTATATGTACTGTACAACCAAGAGGCCCTGTATCCAAGCCCAGAGGAGGGCTGGCAGATCTACAGCTCGGCACAGGACGCAGATGGGAAATGTATCTGCACCGTTGTGGCTCCGGCACAGAACATGTGTAATCGAGACCCGCGCAGCAGACAGCTCCGTCAACTTATGGAGAAGGTTCAGAATATAACTCAATCCATGGAGGTGCTAGATCTGAGGACGTTCAGAGACCTGCAGTATGTGAGAGACACAGAGAATCTCATGAAAACAGTGGACGGCAAACTGAAGACCGCCTCTGAAAATCCACGCAGCCTCAACCCCAAGAGTTTTCAGCTAGCAGGTGCTTTCCTAAACGCTAAGATTCAGACCGCTTTATTCTTATCTTTTGAATCGGATAGTGTGCTTGTAGCTCTGAAAATGAGATTTATGATGTGGCGCCGCAGGGCTGAGAGCAGCTCCATCACTAGATTTACGATAAACTTTAACAAGGAGGAAACAGCCCCTCCTGTGGAGTTAAAGGACAAGGTTACTCAGCTGCTTCCCCTGCTGCCAGTGGTGGAGCAGTACAAAGCGGATGCGAGAATGATCCTGCAGCTGAGGGAGGAGGTGAGGAATCTGTCCCTGGTACTCATGGCCATTCAAGAGGAGATGGGAGCCTACGACTACGAGGAGCTCAGGCAGCGAGTGCTATTACTGGAGACTCGCCTGCACTCCTGCATGCAGAAACTCGGTTGCGGGAAGCTAACTGGCGTCAGTAACCCCATCACCGTTCGCGCCTCGGGGTCAAGGTTTGGCTCCTGGATGACTGACACAATGATCCCTAGCTCCGATAATAGGGTGTGGTCAATGGACGGTTACTTTAAGGGACGTCGTGTGCTGGAGTACCGCACAATGAATGACTTCATGAAGGGCCAGAATTTTGTCCAGCATCTCCTGCCCCACCCTTGGGCTGGTACGGGCCACGTGGTCTACAACGGCTCCCTCTACTACAACAAATACCAGAGTAACATCCTCATCAAGTACCACTTCCGATCCCGAAGCGTCCTGGTGCAGCGCAGTCTTAGCGGCGCGGGCTATAACAACACCTTCCCCTACTCCTGGGGCGGATCATCCGACATCGACCTCATGGCCGACGAGAACGGGCTGTGGGCCGTCTACACCACCATTCCCAACGCTGGAAACATCGTCATTAGCCGTCTGGAGCCACAAAGCCTGGAAGTGCTTCAGACGTGGGACACAGGCTTCCCCAAACGGAGCGCCGGCGAGTCGTTCATGATCTGTGGCACACTCTATGTCACCAATTCCCATCTGGCTGGTGCTAAGATCTACTTCGCATATTACACCAACACCTCAACCTATGAGTACACAGACATCCCCTTCCATAACCAATACTCCCACATCTCCATGATGGACTACAACCCCCGAGAACGAGTGCTCTACACTTGGAACAACGGACATCAAGTCCTCTACAACGTCACATTGTTCCAGGTCATCAAAACCGCTGAGGACTAGGTCATGCAGACCTTAAAAACACATTTGCTCATACACAAATATACACACACTGATATGCCCACACAAATCACACACATCTACAAAACATGTATGTGGAGGAGGACATGACTAAAGCTTAGACTTTTTTACTGCATTCCAAAATTCATAGAGTGCTATTATTCATCTAATGTTCTGAGAAGAGCAAGATTGGTACTGGTATATGGACTGAGCCTTTATTTTCTTTCCTGTGATGATTCAGCATGAGTACTTTCTTTTTATTTGTGAAAAAAGAATAAA

Function

symbol description
olfm2a Acts upstream of or within neural crest cell development. Predicted to be located in extracellular region and synapse. Is expressed in several structures, including midbrain neural tube; nervous system; optic cup; optic vesicle; and pancreatic system. Orthologous to human OLFM2 (olfactomedin 2).
olfm2 Involved in positive regulation of smooth muscle cell differentiation. Acts upstream of or within protein secretion. Located in cytoplasm; extracellular region; and nucleoplasm.

GO:

id name namespace
GO:0014032 neural crest cell development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_00770409_00789987.mRNA True 2658 mRNA 0.49 8 770133 790683

Neighbor

gene id symbol gene type direction distance location
CI01000113_00616541_00627359 NA coding downstream 142774 616361 ~ 627359 (-)
CI01000113_00611039_00611881 P2RY11 coding downstream 158194 610860 ~ 611939 (-)
CI01000113_00593453_00601556 EIF3G coding downstream 168577 593382 ~ 601556 (-)
CI01000113_00529415_00542504 NA coding downstream 227113 529230 ~ 543020 (-)
CI01000113_00511782_00515713 NA coding downstream 254420 511423 ~ 515713 (-)
CI01000113_00907179_00957938 COL5A3B, COL5A3, COL5A3A coding upstream 116258 906941 ~ 958094 (-)
CI01000113_01096667_01106622 RDH8 coding upstream 305639 1096322 ~ 1106870 (-)
CI01000113_01137145_01178626 CAMSAP3 coding upstream 346314 1136997 ~ 1178626 (-)
CI01000113_01180049_01192316 XAB2, SYF1 coding upstream 389153 1179836 ~ 1192316 (-)
CI01000113_01208541_01221483 STXBP2 coding upstream 417206 1207889 ~ 1222083 (-)
G332415 NA non-coding downstream 15171 754741 ~ 754962 (-)
G332414 NA non-coding downstream 18234 751655 ~ 751899 (-)
G332393 NA non-coding downstream 48277 721657 ~ 721856 (-)
G332389 NA non-coding downstream 63872 705979 ~ 706261 (-)
G332384 NA non-coding downstream 80145 689750 ~ 689988 (-)
G332405 NA non-coding upstream 47898 838581 ~ 846812 (-)
G332427 NA non-coding upstream 72651 863334 ~ 869739 (-)
G332458 NA non-coding upstream 186617 977300 ~ 977523 (-)
G332524 NA non-coding upstream 327128 1117811 ~ 1118547 (-)
G332574 NA non-coding upstream 448988 1239671 ~ 1239956 (-)
G332160 NA other downstream 323296 390227 ~ 446837 (-)
G332210 NA other downstream 720648 47990 ~ 49485 (-)
G332649 NA other upstream 1356531 2147214 ~ 2148558 (-)
G332837 NA other upstream 1460162 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 1576933 2356565 ~ 2370009 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008450 olfm2,LOC104918560,LOC100706999 coding CM030126.1 CM030126.1 1497221 ~ 1506574 (+)