G334115


Basic Information

Item Value
gene id G334115
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000115
NCBI id null
chromosome length 2997417
location 2701469 ~ 2703638 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU379849
TGTGATACTGTAAATACGCCCTTGAGCTTTTCACCACTTCTGCGGTGTATCATATCATATTGACTTTTATAAGTCACGTTTCATGAATGGGGAGGCATACAGCATCACCTTAAACATCAATTGTAGGAGGGCATCATAAACACTACAGCACATGTAGAAACAGCAGGCATCGGGATGAACATGGCAAAGTATTCGCCCCATTCAGCCCGATATTACGAATGCAGCAGTTCCATCTAAAGGATGAAGCTGGTACTGCATTTCACATTCAGATGCTTGTCTAACTGTACATTTCCTAACCATTATAATGAATTCCCTTTATTAAATCTACTTGTGACACTGAGTCAACTGGAATGAGAGTATAAAGCATGTCTAACATGCAGGGAAGCCCCTAGTCAATGACTGCGGGTATTCAGAGTGCTGTCCTCAAAGGAATTCGGGTATGACTGCATGTAATTGACCAGAGGTCCTGTGAATCCCGTGTGTTTGTTGTCAATGGAATTTTTCCGGCTAAGAAACATGCATTGTCTCAGATTGAAATAAAACCATTTGACGCCTCACGTACACATAAACGCATATGGGCACGTATATACGCCTACACTCGGGCTCTCTTTACATCAGTTGGGGCAGATGTTCAAAGAGTTTAGCACATAATCAGTGTCTTTTTACCGTGAAAACCAAAAAAACAGGGCTGATTACAGTTGATAAAGTGACTCAATAGCGGTGAGCTGTGCGTAAAGAATGCGAAACATTACAACAGAGGATTGTAGTTCTTTAACCCCTGATAAACTCAACCGATTATACCAAAAACAGTCCTGCATGGTATGCCATTCCCAGTGGTTTAATGTACAAGGCTGGCTAAAGTCCTACAGTTCAGCAAGTCAGGACAGCGCCGCATGGGAAAGTGCAGCCTTGCTATGCTTGTCCTTCAACCGTAAAGGGAGAGTCGGGAGGCAATCTTTAAAAGTGGGCGCCACAGACGTGCACGGACTCATTCATGTCCACAGGAAGCATGCTGAAGGATGAGGTTTGACAAGGCAAGTTAGGCCGTTCAGGGACTGCTCCCATTGTTAAAGGGACAGTTCAACTAAAAATGAAAATTATGTCATTATTTACGTCGCCTCCAGACACATTTATCCTGGCCACTATTTCAAAATATAATGAATGTGAATAGGACTTCTCCAAAATAACAAAAAAGTGATTCAAAATGGATAGCTTTGTGCGTAAAAACTGGGCATAATTTAAAAGGTTAATTCACCCAAAAATGAAAATTCATTGAAAATCCTGACATTTGCTCTGGAATGCTCATGAGAGAAGAAGCGTTGGACTCAATGGATTCACAAATCTGACTGAACTGGTTCTCGTGTTCAGCTCACTGAATCAATGATCCAGTCTTAGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU379849 True 1398 lncRNA 0.42 2 2701469 2703638

Neighbor

gene id symbol gene type direction distance location
CI01000115_02645752_02648071 NA coding upstream 53207 2645543 ~ 2648262 (+)
CI01000115_02639922_02642578 NA coding upstream 58799 2639350 ~ 2642670 (+)
CI01000115_02625188_02632282 NA coding upstream 67792 2624795 ~ 2633677 (+)
CI01000115_02577134_02587408 NA coding upstream 113966 2576539 ~ 2587503 (+)
CI01000115_02565311_02568828 NA coding upstream 132635 2564641 ~ 2570993 (+)
CI01000115_02708264_02721532 NA coding downstream 4277 2707915 ~ 2721911 (+)
CI01000115_02732751_02736677 NA coding downstream 29113 2732751 ~ 2736762 (+)
CI01000115_02741148_02759858 KDM7AB, KDM7A coding downstream 36775 2740413 ~ 2760406 (+)
CI01000115_02766586_02782549 CNOT1 coding downstream 62948 2766586 ~ 2782763 (+)
CI01000115_02811635_02815772 NA coding downstream 107997 2811635 ~ 2815772 (+)
G334103 NA non-coding upstream 7659 2692579 ~ 2693810 (+)
G334004 NA non-coding upstream 143521 2542810 ~ 2557948 (+)
G334047 NA non-coding upstream 239219 2461938 ~ 2462250 (+)
G334045 NA non-coding upstream 248163 2452969 ~ 2453306 (+)
G334110 NA non-coding downstream 51175 2754813 ~ 2794415 (+)
G334108 NA non-coding downstream 88233 2791871 ~ 2804132 (+)
G334112 NA non-coding downstream 94340 2797978 ~ 2806078 (+)
G334138 NA non-coding downstream 106466 2810104 ~ 2810309 (+)
G334140 NA non-coding downstream 119267 2822905 ~ 2823119 (+)
G333298 NA other upstream 2013794 683160 ~ 687675 (+)
G333237 NA other upstream 2164156 461127 ~ 537313 (+)

Expression


Co-expression Network