G334108


Basic Information

Item Value
gene id G334108
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000115
NCBI id null
chromosome length 2997417
location 2791871 ~ 2804132 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU379841
AATTTATTATGCAATATTCATCTGTCTTAAAAGAATTCACTAAGCAAACAGACATAAATTTACTATGACAATAAAATGAAGCATATAAACAGAGACAATGTTATCTTTATCTGGCATAAAGGCCTCAGGTTTCTGCTCATTCAGGAAGTTGGCTGGGTTAAGTCATGAGGAAACTTCCACTTGTCCTTCTCAAACAGCACAGACTCAGCTAACAGGGAACATTCTCAGAACAAATATTCTGGCAAGGTTTTCTCATAAATATGAACAAACGTTCTTCCAGTAACATTAACAAAACATTCTTTCAGAGTTATCTGGTATTTAATAATGTTCTCAAAACATTAGCACAAAAACATTATTTATACAATGTTCATGGAACGTTTTTGTTTTTTGTTTTTAATACTTGTTACTTTTGAATGTTCTCTGAACATTCTGAAACTTTTAAAACATTTAAAAAAAAACTGGACATTTCAAACACTTAGAAAACATTCAAAAATAAGTTTTTTATAACTTATTAGCAAAACATTCTTAGGACATTTTTGCTAGCTGAGGAGGAGAGGTTGGGATTGATGAGAGTTCCCTGTAATTTGCATTTAGTATTCAATTAGCATTTCACAAACATTGTATAAACACTTCACTGATTCTGTCATATCGTCGTTTTGATGACTCTTGACTGGTAGTGTGGTTATTGCTGGACAGAGGATAAGTGGTTTGGAGAAAGGATGGATGGATGGATTTCCTCTAGTCCACCCAAGGGTAGAGGAGACACAGCAATGAGATCATTCAGAGCTGATATTTTGCTTATTATCAAAATAATTCTCACTTAATTATAGTCATCTAAAGCATTTTAATGTGAGATGTTTTGCCTTGCATTATTTCAGAATTTATAGATCTTTATTTCAAAATGAACAACTCAAAAGTGCAAAGGGAAGACTTATGCAAAAAAATTATTTCACAGAACTGGGACATTTGCTAGGGATGTCTCAAAAATAGACATGAAGGCCACATATAACAACTAGAATAGACATTTATTTTATTAATTACCACAGTTTTTCAGCAGCCTTGGTTTCAGAAATATTAATTTTCTCCATAGGGATTTCAGTGACTTCATTGACAGAGCTCACTTTGGGATTATGGGTAGTGTAGCTGAACAGGAATTCAGCTATTACAGGATTAGTTCACTTCATAATTAAAATTTCCTGATAATTTACTCACCCACATGTCNNNNNNNNNNNNNATGTCCCTCCCCCTAATAGCCTACTGTATCTCCTTCGTCTGATTAGCAATAGCATGTAGAACATCACAGTTTAATCATTAGCTATAACAAAAATGGACGGAATAGAGGAAAACTGCAATAGTCAAGCAATTTCACAGGGTGTTTTGAACTGAAATCTCACCATGTTCCATGGTCCATTGAGCATCTTTGAAACCTCTGTAATGAGCTGGACGTAGCGCTGAAGGAATTCATTGTTGTAATCAAAACGGGATCCGAACAGAACCAAGCCAATAACATTTGATGCTACATTGTGGAACATATTCTGAGGATTCACAGTTTCTCCTGTACAAATGTAAAGTATTAAAAAGAATGACATTTTCATTGTCAGCTGAGACATAAAATTAAAAATTTCACATTGTCTAAATTGACAATTGCAAAATCTAAATTACATTGTTTAAAACATACAAATACCAGCATTTTTGTCGAAGTAAGCAACAATGTGTGAAATCTCTCCCAGAATTCTCTCCTCCATGGACTGCTTCCCTAGGCCAAAGTCCCTCAGGGTCATCAAAGCAAAGCGTCGATGATCCTTCCAACGGGGGCCATAGTCAGCCAAAACAACACCTTTATTAAAATCATGATTTTAGTTAAAAGTTGTAGGGTTTCTAGAACTAAACATATTACAACAGATTATATTTACCATCATAACATAGCCTATAACATGTTCCTGATATAAGCTATACTTTTTACTTACTCAGTCCTGTTGCGTTGCGTTGCGTTGTGCGCGTGCGCAATACCAAGTGGACCGATTGCTCAAATCACTCGTGCATCGCGGACCGATACAGGAGCGGAAGGCGAACAAGCGGATTATACTTTCGGCTTTACGCCAGTAGGTGGCGACAAGTTACTGTCGTCAGTCATTCACTCAACCAATTCTTTTGAAATTCATTCAAGAAGGACATAATTGATGCAGAACGATTAATCCTCTGACTTCGTTTGGAACTATTTTCGTTGGCGGAGCAAAAGAGGCAAGTTAATGTTGTGTCTAATATGTGAGTCACCCTTTATTGAACTGTTGTATAATTAAAGCAGTTTCACTCTGACTAGATTGTGATTTTCTTAGCTGAAATCTACAGCTTGTAGTGGGAGTTACCTTTATTCTCCGTCATATGACTGATCATGAAGTCTTGAGGCCGTCCTGAGAAGTCTTTAGCCTTCGTAACCAGAGCTTCCCTAATTACCTCAAAACTATTCAGAAAAACTGTTGGTCTTGATCCAGTATACAGACTGAATATTTTTCCATATCGTTCTGCAAACTTACAAAAAATGGAAATGTTTTTACAAACAAGAAAAAAAATGTTTAAAACTTACGATGAAATAAAATAAAGCCATACTCTTTCAAAATCCTTCAAAGGATTGGTCATGTTCACATGAAGAAGATTCCCAAATATTGGCAGAGGACGAGGTCCTGGAGGAAAATTCTTTGGCCTCTGGATCCGGACTAGGAGGAAGATGAAGAAGATGCATATCCACATGAGAATCAAAGAGCCCAGCATGCTGACTGATGTCCAGCTGTCGTCTCTCTGTTTCACTCAAGCAAAACAAGCTCATGAACTCGAACCACTCAGGTACAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU379841 True 2847 lncRNA 0.36 3 2791871 2804132

Neighbor

gene id symbol gene type direction distance location
CI01000115_02766586_02782549 CNOT1 coding upstream 9108 2766586 ~ 2782763 (+)
CI01000115_02741148_02759858 KDM7AB, KDM7A coding upstream 31465 2740413 ~ 2760406 (+)
CI01000115_02732751_02736677 NA coding upstream 55109 2732751 ~ 2736762 (+)
CI01000115_02708264_02721532 NA coding upstream 69960 2707915 ~ 2721911 (+)
CI01000115_02645752_02648071 NA coding upstream 143609 2645543 ~ 2648262 (+)
CI01000115_02811635_02815772 NA coding downstream 7503 2811635 ~ 2815772 (+)
CI01000115_02829570_02846446 ELMO3 coding downstream 25438 2829570 ~ 2846826 (+)
CI01000115_02852943_02854209 NA coding downstream 48811 2852943 ~ 2854209 (+)
CI01000115_02964243_02995479 NA coding downstream 160111 2964243 ~ 2995555 (+)
G334115 NA non-coding upstream 88233 2701469 ~ 2703638 (+)
G334103 NA non-coding upstream 98061 2692579 ~ 2693810 (+)
CI01000115_02565311_02568828 NA non-coding upstream 220878 2564641 ~ 2570993 (+)
G334004 NA non-coding upstream 233923 2542810 ~ 2557948 (+)
G334047 NA non-coding upstream 329621 2461938 ~ 2462250 (+)
G334138 NA non-coding downstream 5972 2810104 ~ 2810309 (+)
G334140 NA non-coding downstream 18773 2822905 ~ 2823119 (+)
G334145 NA non-coding downstream 45625 2849757 ~ 2849996 (+)
G334088 NA non-coding downstream 81665 2885797 ~ 2928920 (+)
G334086 NA non-coding downstream 82426 2886558 ~ 2890857 (+)
G333298 NA other upstream 2104196 683160 ~ 687675 (+)
G333237 NA other upstream 2254558 461127 ~ 537313 (+)

Expression


Co-expression Network