CI01000119_01346109_01356546 (BCL9)


Basic Information

Item Value
gene id CI01000119_01346109_01356546
gene name BCL9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000119
NCBI id null
chromosome length 2769458
location 1345181 ~ 1356546 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000119_01346109_01356546.mRNA
CTGCTGTCCAAGGCGTTTGGATTTTCTCTGAATGTTGGAAGATATTTTGCATTATAGTGTGCAGAGCTCTGAAACACGGCCAGGGCCTGTGTAACTGGGTGTGGTGGCTGCAATCGGCTGGTCAGCTGCTAAGATATGACTCAATTGTCTTTTTTGTGTTTTTTTTCACTCTGGCCTCTGTGTTTTGGTGGGTTCTTTACCAAAGTGAGGGAAGCAGTCCGAAATCCAAGCAGGAGGCCATGGTGAGGTCGCCACCCGTGATGTCCCCCTCCAGCGCCGCACAGATGGACTCCAAACTGCCCAACCAGGGAAAGCAGGGGGGCGCCGGCAGCCAATCACAGTCGTCTCCTTGTGACCCCAAGTCGCTGAGTGGAAGCCACACACCCAAAGGTCCCCAAGGCTCCATAGGGAGTATGGGACTCAAAAATGGACAAGGCCTGAGTTCAGGCAATGGTGCAAAAGGCAAGATTAAGAGAGAGAGAAGCACTTCAGTGGAGTCATTCGAACAAAGGGATACAGGAACGCCAAGCAATGAAGGGGACCAGAAAGAAATAGGCAGTAGAGCAAAAAGGTTATGTGTTGGAGAGCGACGGTTGCCCTACAGCGGTGCAGATTGGTGTTCAGGGGGAGAGAGCGATGAAGATGATCCAGGATTCTTCAACTGTAATTCCACTGACATAAAGCCAGATCCAGGTGCTCTTTCTGCCTCTACGCCTACCCACAATACAGGACAGAGCACAACGTCTGAACTGGGGAGTGGGCAGAAACCAGGGTCAAAGGTTGTTTACGTCTTCACCACAGAGATGGCCAACAAGGCAGCAGATGCAGTCATAACGGGGCATGTAGACAACATCATCACTTACCACATGAATAATATCTCTAACGGCAAGGGTGGAAAGCCCCAGCTCCCCCTGAACAATCAGATTGGGTCCCTCAGAAGTGACACTAAACAGGGAGTTCCGTCCCAGCAACAGCCCTCATCTCACTCCAGTGATCAGAACCACCAAGCAGCCTCTAAAGTAGCGCAGTCAGGCCAGCAGCAACAACCTCAAGCGCAACCCACCCAACCTCAGCAGCCAACCCAGGGGGCAAAACCAACTAGCCTCCCTCCAGACAATGCACCTTCAGCTGGTATGGACTCTAAGAGCCTCCCCAGCAGTAGCCCACAGGATGGTGCTGGATCCCATGATGGTAGCAACTCTGCAGGGACACCTGGTAGCCAGGCCTCCAACCAGCCTCCAAATGCTGGCCCTCAACAGGGCTTCCCATCCCTAGATCTACCTAAAGGGGCAGATGCTAAGCTCACAGCTCAACACCACCAGCAGCTGGCTCATGAAATAATGTCTAGCATGGGGGACAACCCTGAGGGCCTTTCCCAAGAGCAACTTGAACACCGGGAACGTTCCTTACAGACTTTACGTGATATACAGCGTATGCTCTTCCCAGATGACAAGGACATGGCTTCCATGGGCCAAGGAAACATGGTTGGACCTCCACCCAATTCTGCAATGATGGAAGGAGGACCTAAGAAACCAGAACAAGGGCCTCTCCAAGCCATGATGGCTCAATCACAAAGCCTTGGGAAGCCAGGTGGTCCAGGAGGACCACGTCCAGATGGGCCTCCCTTTGGTCCACCTGGTCCTAGAGACATGCCCTTTTCTCCAGATGATCTTGGACCCCCTCCACCAGGTCCAGGACCTATGAACTCACATCCAGGTCCTGGTGGAGAGCATGGAGACCATATGACCCCAGAGCAGATGGCCTGGCTAAAATTGCAGCAAGAGTTCTATGAGGAGAAGAAGCGCAAGCAGGAACAAATGCAGCATAGACCAATGGGAGACATGATGCTCCATCAGGGTGGACCTAGAGGAATGATGCGAGGCCCACCGCCACCCTACCAGATGAATCCTGGAGAGGTGTGGGGCCCTGGTGGCCCTGAACCATTCCCTGACCAGATGAACATGGGCCCCAGAGGGATGCATCCACACATGCAGAGGATGCCTGGCTTCCCAGGTATGATGAACCCTGATATGGATGGAGGGCCCAATGCTATGCCCAGACCTGGAATGAACTGGCCTGATGATATGCCCAAAATGGGTGATGGGAGGGGATTCCCTCCTGGCCAAGGCATGTTTGGAGGTCCGGGTGGAAGGGTGGAAAGATTCCCCAATCCTCAGTCTGTACAGGAAGCTATGTTCCATCAAAGTATGGGTGATAAACCAGGCATGGGTCTTACACCTGGCATGATGATGGAGATGAATCGAATGATGGGTAATCAAAGACCCATGGAGCCTGGAAATGGAGGTGGCATGATGTTTCCCAGAATGCCAGGTGATGGTCCTATGAGCCCCTCCTCAAGAATGGAGTTTGTGAAAGGTCTTGGTCGAGACATGGGTGAATTTGGCATGGGGCCTGGAAACCTCAATGTAAACATGGGCCCTAGCCCTCAGATGATGCCCCCTAAGATGAGAGATCCACCAATGAATCTTAGTCCAGAGGAAATTATGAAGATGAGGCAAGGTGGAGGTCCAATGCCTGAGAATGTGGTTGCTTCACAGAGAATGATGCAGGGGCCTCCTTTCCCTGACCAGCCCCATGCAGGAGACCTCAACATGGGACCCAACCGACAGTTCCCTGGCATGGGTCCCCAAGGCCCTGGAAATCCAAGAGGTCCCAGAGGCGAGCCACCCTTTGGACCTGACCAAAGAGGTAATGTGGGTGGAAATGGTCGTCTTAGTCATATGCCTCCTTTACCACCAAACCAGGCTCCCAACAGCTCAGGGCCTCCGCCCGGCCAGAGGAATATGAGTCGCAAGCCCTCAGACCTAAATGTTCAGTCTGGCCCCGCTAACTCACCCAACGTCAATGTCAATCCGCTAAAGTCACCAACACTGCGGCAGGTCCAGTCTCCAATGCTGGGCTCACCATCAGCAGGGGCATCACCCGTCCATATGAAGTCACCCTCGCTCCCTGCCCCCTCCCCTGGCTGGACGTCATCACCTAAGCCGCCCATGCAAAGTCCAGGAATCCCTCAGAACAACAAACCTCCCCTTAGCATGACGTCACCAAATATGATGGGCAGTGTAGACCAAGGTGGTATGAATGTGCCAGGAAGTCTTCCATCCAGCAGCCCCTACACCATGCCCCCAGAGCCAACGCTATCCCAAAATCCTCTTTCCATCATGATGTCCCGCATGTCCAAGTTCGCCATGCCCAGTTCTACACCCCTCTACCATGATGCAATCAAAACCGTGGCCAGCTCTGATGATGACTCGCCGCCTGCCCGATCACCAAACCTGCCATCTATGAACAACAGCATGCCCGGTATGGGTGTGAACCATCACCCAGGTCATCCTCGAATGATGACACCTAACTCTTCTGGCCCCATGCCTTCCCTGAGTCCAATGGGGATGAACGCTATGGGTTCCCAGCCACTTTCCCATGGCATGCCAAACCAGATGCCCTCGCCCAATCCCATGGGCCCTAATATGCCTCCTCACTCTGGGCCTATGGGTCCAGGCATGATGCCTCATGGTATTATGATGAACCCAGTCTCCCAAGATCCTGGCATGGGCAACAACCAGATGATGTCACAGGGACGTATGGGTCTTCCTCACCGAGGACAGGGCTTCCCCCCTGGACAGTCACCTCCACAACAGGTCCCCTTTCCTCACAATGGTCCTGGGCACCAGGGTGGCTTCCCTCATGGGATGGGTTTCCAAGGAGAAGGGGGGCCACTGGGCAGGATGGGCAATATGCCTCATGGACCTGGTGGTGAGCCAGGTATGTGTAAACCTAATACTCCAGGAGGCCAGGAGTTTAATAACATGCCAGGTGTCTTTAATGATTCTGATCTACACGAGGTCATGCGACCAGGTGCGTCAGGTATCCCTGAGTTTGACCTCTCTCGAATTATCCCTTCTGAGAAGCCCAGCCAGACTCTGTCCTACTTCCCTCGTGGTGGGGACGCCCCTGGTGGGAAGCCGCCACACCCGTCTGGCCCACCTGGATTTCCCCAAATGCAGGGGATGATGGGTGAGAGCAATCCAAGGATGGGCCTCCCCATGCAGGGAATGGGTGGTCCTCCTGGCCCTGGACATATGGGACCACAGGACATGCCCATGGGTAATCCAGGTCACAACCCTATGAGACCCCCAGGTTTCATGGGTCAGGGTATGATGGGGCCACAGCATAGGATGTTGTCTCCTGGCCAGCAGCCAGGAATGATGGGAGGCCCTGGAATGATGCAGGGAAAGGAAAGGCCGATGTACAACCACCCTGGGCCTGTGGGCTCTCCTAACATGATGATGTCACTACAAGGGATGAGCGGTCCTCAGCAGACTATGATGATGCCCTCTCAGATGAGGCCTCGAGGAATGGCAGCAGATATGGGCATGGGATTTAACCCTGGCCCAGGGAACCCTGGGAATTTAATGTTTTGAGCCTACACTACAGTTATGAACAATCGAGAAACTGTGTAACCTGTGAATTAACAACCTTCGTAATGATATACAAAAAGAAACTTTGTTCTTAAGCAGATATGTATGGAAACCAGGACATTTTTGTGCACATACACACCCTGACACCTGGTTAGAACAAGGTTTATAGCTTACACAGTGATGGGTATCCATCACATACACATGGATGTGTTCACAGGGAATCTTCTCCAATGGTAATGTCATTTAACAGGTGAAAGTGTGAGAAGCCAATTGTGCTTTCCTCAAAGTTGGGCTCAGGTCCGGCACCGTTTGGAAGGGACTTTTTCGGCAACTTGGGAATGTATATGGAATTTACAAGACTGACTCGTGTCAAGGATATTTGCTTTACATCGTGGCATGATGCCACATATAAGTCTACAGCAAACCAAGTATGAACGTTTAGGGGCTTCATTGTACTTTTATACATGGGTGGAAACCAAGAAAGATTGTTGAAAAAAGAAAAAAAAAAAGTTCATGAACTGAAAGAACAGATATGAAAATGGAAAAGTCAAGGAACATTTTGTCACAAGGTGCACCGTCTTGGCTATATGTTTACATCTCATCGCATCACTTCCCTCCAAACAGGAAATGCTCTTTATATGTGTGTACTGTACTTGTGTTGTTAAAGGGATTCTACCAGTGATTTCTATAGTTTTTTTTTTTCTTTTTTTTTTTCTCCATCTTCATTTGTAAAGGGGGGATTGAGGTGGTTGTTTGTGTACCGTAGGTGACACAACAGCACCACAAAATACTGTGTACTGTGGGGCGTACAGAATATTTTAAATTTAATTTTCTTTGCTACTCCAGTGTATGATAAAACCAAACTAAGACCTCATACAGATCATAGTATTATTAAAAAAAGCACAAACAAGAATTAACTGTAAAGAATAAA

Function

symbol description
bcl9 Predicted to enable beta-catenin binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis and regulation of canonical Wnt signaling pathway involved in heart development. Predicted to be located in nucleus. Predicted to be part of beta-catenin-TCF complex. Orthologous to human BCL9 (BCL9 transcription coactivator).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000119_01346109_01356546.mRNA True 5370 mRNA 0.51 10 1345181 1356546

Neighbor

gene id symbol gene type direction distance location
CI01000119_01319695_01320873 GJA8, CX44.1 coding downstream 23980 1318783 ~ 1321201 (-)
CI01000119_01297333_01303971 FSTL1A, FSTL1B, FSTL1 coding downstream 41210 1297231 ~ 1303971 (-)
CI01000119_01289193_01294766 LRRC58A coding downstream 50415 1289055 ~ 1294766 (-)
CI01000119_01277614_01286844 NA coding downstream 58337 1277576 ~ 1286844 (-)
CI01000119_01250861_01260985 NA coding downstream 84104 1249506 ~ 1261077 (-)
CI01000119_01464980_01476481 NA coding upstream 107719 1464265 ~ 1476481 (-)
CI01000119_01477397_01480508 CBR1 coding upstream 120312 1476858 ~ 1480508 (-)
CI01000119_01487373_01493240 CRYZL1 coding upstream 130652 1487198 ~ 1493484 (-)
CI01000119_01566016_01566309 NA coding upstream 209203 1564420 ~ 1566309 (-)
CI01000119_01567450_01592488 NA coding upstream 210399 1566945 ~ 1592488 (-)
G337675 NA non-coding downstream 29412 1314542 ~ 1315769 (-)
G337673 NA non-coding downstream 69145 1273464 ~ 1276036 (-)
G337674 NA non-coding downstream 118285 1216613 ~ 1226896 (-)
G337687 NA non-coding downstream 138062 1205986 ~ 1207119 (-)
G337645 NA non-coding downstream 272246 1072681 ~ 1072935 (-)
G337688 NA non-coding upstream 22903 1379449 ~ 1450252 (-)
G337680 NA non-coding upstream 61881 1418427 ~ 1426429 (-)
G337679 NA non-coding upstream 73491 1430037 ~ 1432642 (-)
G337754 NA non-coding upstream 146699 1503245 ~ 1503707 (-)
G337668 NA non-coding upstream 164131 1520677 ~ 1521141 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000600 bcl9 coding NC_007112.7 CM002885.2 47331644 ~ 47411186 (+)
mexican tetra (Astyanax mexicanus) G103060 bcl9,LOC107746285,LOC107676875,LOC107566537 non-coding NC_035908.1 CM008311.1 12730421 ~ 12733320 (-)