CI01000119_01567450_01592488


Basic Information

Item Value
gene id CI01000119_01567450_01592488
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000119
NCBI id null
chromosome length 2769458
location 1566945 ~ 1592488 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000119_01567450_01592488.mRNA
TGGGTCTGGAGAGTTGCTCAGGAAAGTTTCACTGCATGTCGTCAGTTCGGTGTATCAGCAGAAAAGCTGTGTGTGACGGAGTCGAGGACTGTGGAAATGGAGAAGATGAACTCAACTGTGTGCGTGTGAGTGGCAGAAGCTCTGTGCTGCAGGTGTTCAGCTGGGGCTCATGGGGGACTGTGTGCTCTGAAGGCTGGGATTCTCAGCTGGGCTCCTTAGCCTGCAGACAACTGGGATACAACAGCTATGTGAGCTCTACTGCCATTCCCATCTCCTCCATTGAAGCAGTATTTCAGAATAATCTAGTGGCTCTTAATATCAACCAAACAGCCCTTCAAGACACCTTCAAGATCCACAACTCTTCATACATTAGATTAGTTTATGATGGTCCAGTACTTATATTCATGATTCTTTTTGTTCAAAGTTTTGCTCAGCCAGTGTCATGGACAGTGCATGCTGGGATGATAGACCAGCCATTGAGTGGATCTAAGGCTCTCTCTGTGGAGAAAATCATCTACCATGCCAACTTCAGGCCAGAAGGACTCAGCTACGACATAGCGCTAATAAAGCTTAAATTACCTCTGTCTTTCAACGACCAAGTAGCCCCCATCTGTTTGCCTAATTTCGGTGAGAGCTTTGAGGATGGACAGATGTGTTTGATCTCAGGGTGGGGAGCCACAGAAGATGATGGAGAGACCAGTGGGTCCCTACAAGTCACTCAAGTCCCGTTACTGTCCAGCAGAGAATGCCGCATACCGGGTCTGACCTCATGGAACATCTGTGCAGGATACTTGGAGGGTGGTGCTGGAGCATGTCAGGGTGACAACGGAGGGCCGCTGGCCTGTCAGGGGTCCGGGTGGACATTGGTGGGGACAGCCAGCTGGGTAGAAAAATGTGAACAAAAAAACAAACCAGGCGTTTACACCAGCACAACTGAAGCTCTCACATGGATTCAGCAACAAATGGAGGCCCAATACAGACTCTATTCACTCTTTGCATATGATTTTATTCCTAGCCGTACACTGGGTTTTGATTTCATGCTCAAGACATTTGATATTAAAGTTTTACAGTCTTACATGTAATGGTACACTGGTATTTAAGAAATGCAAATAAGTTTTAATTTATTTATTTTTTACAGAAAGAAGAGGATCAGCGTCGTTGAGCATTTCATGGTGGACAAGCTTCTGCCGACTCACATATTTCCATACCTAACATCTGACATGACCTAATCCAACATGGCTTTGGCTTATGAAAGGGAATCATGTCATAGTATGACAGAGGCATATATATATATATATATATATATATATATATATATTCCTCTGTCTGTATATATGCCCTTCATAAGCCATGTTGGATTGACTATACTGACCAGAACAAAAATACAGTAAAAATACTAATTTTTAAGTAGTAATTTAAAGTTTATTTGTAAAATGCTATTTATTGTACTTTTGTTTGTTTTGTTTATTTGGGTCCAAATATTTATCATTTATTTATCCATGCATGTTGAAATGTTTTAGTGCATATATTTTTGTATGTAAGGCCAAATGTACACACTAACGTGATGCATTTACCATTCTCATTAAA

Function

NR:

description
SI:dZ69G10.3 (novel protein similar to human transmembrane protease, serine 3 (TMPRSS3)), partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000119_01567450_01592488.mRNA True 1587 mRNA 0.42 8 1566945 1592488

Neighbor

gene id symbol gene type direction distance location
CI01000119_01566016_01566309 NA coding downstream 636 1564420 ~ 1566309 (-)
CI01000119_01487373_01493240 CRYZL1 coding downstream 73461 1487198 ~ 1493484 (-)
CI01000119_01477397_01480508 CBR1 coding downstream 86437 1476858 ~ 1480508 (-)
CI01000119_01464980_01476481 NA coding downstream 90464 1464265 ~ 1476481 (-)
CI01000119_01346109_01356546 BCL9 coding downstream 210399 1345181 ~ 1356546 (-)
CI01000119_01719858_01724053 NA coding upstream 126712 1719200 ~ 1724675 (-)
CI01000119_01772540_01773244 ARL11 coding upstream 179681 1772169 ~ 1773361 (-)
CI01000119_01800069_01805163 CAB39L, CAB39L.L coding upstream 207551 1800039 ~ 1805636 (-)
CI01000119_01812207_01836473 MCF2L, MCF2LA coding upstream 219432 1811920 ~ 1837037 (-)
CI01000119_01845166_01848192 NA coding upstream 251974 1844462 ~ 1848192 (-)
G337667 NA non-coding downstream 33339 1529920 ~ 1533606 (-)
G337668 NA non-coding downstream 45804 1520677 ~ 1521141 (-)
G337754 NA non-coding downstream 63238 1503245 ~ 1503707 (-)
G337679 NA non-coding downstream 134303 1430037 ~ 1432642 (-)
G337779 NA non-coding upstream 491 1592979 ~ 1593196 (-)
G337858 NA non-coding upstream 76957 1669445 ~ 1669747 (-)
G337861 NA non-coding upstream 78786 1671274 ~ 1671767 (-)
G337862 NA non-coding upstream 80182 1672670 ~ 1673025 (-)
G337863 NA non-coding upstream 83707 1676195 ~ 1676399 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000594 tmprss3b coding NC_007112.7 CM002885.2 46948010 ~ 46957351 (+)