XLOC_000594 (tmprss3b)


Basic Information

Item Value
gene id XLOC_000594
gene name tmprss3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46948010 ~ 46957351 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001024
TGGGCCTGAGGAGCTGCTCAGGGAAGTTTCACTGTGTGTCGTCAGTTCGGTGTATCAGCAGAAATGCTGTGTGTGATGGAGTACAGGACTGTAGAGATGGAGAAGATGAACTCAACTGCGTGCGAGTGAGTGGCAGACACTCAGTGCTGCAGGTCTTCGGCAGGGGCTTATGGAGGACTGTGTGCTCTGAGGGCTGGGATTCCCAACTGAGCACTTTAGCCTGCAGACAACTGGGATACAGCAGGTCGGCAATAAGCAGTCGTATTGTAGGAGGGAATGTGTCGAAGTCTGGCCAGGTCCCATGGCAAGTCAGCCTTCATTACCAGAACCAGTATCTCTGTGGAGGATCCATCATCAGTGAGAGCTGGATACTCACTGCTGCACACTGTGTGTTCGGATTCGCGCAGCCAGTATTATGGGATGTGTATGCTGGGTTGATAAACCTGCCGCTGAGTAAAGCTGAAGCTCATTCTGTGGAGAAAATCATCTACCATGCCAACTTCAGGTCAAAAAGCTTCAGCTACGACATAGCGCTGATAAAGCTTGCACTACCTCTGACTCTCAATGATCAAATAGCCCCCATCTGTTTGCCTAATTACGGTGAGAGTTTTAAGAATGGACAGATGTGTCTGATCTCAGGCTGGGGAGCCACAGTGGACAGAGAGACTAGTCTTTCTCTACATGTCGCTCAGGTCCCTTTACTGTCCAACAAAGAATGCAGGAAACTGGGTTTGACAAACTGGAACGTCTGCACAGAATTTTTAAGGGGTGTTGGAACATGTCAGGGGGACAGTGGAGGGCCGCTGGCCTGTCAGGGGTCCGCGTGGACACTGGTCGGGACAGGCAGCTGGGATGAAAACTGTGGAAAAGTAAACAAACCAGGAATTTACACTAGCATAAGTGAAGCTCTTACATGGATTCAAGAGCAAATGgaggtaaaatatatatttactgaaaTTACTTTTGTGGAATTGAGTTGA

Function

symbol description
tmprss3b Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 8 and sensorineural hearing loss. Orthologous to human TMPRSS3 (transmembrane serine protease 3).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-522 Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 8 and sensorineural hearing loss. Orthologous to human TMPRSS3 (transmembrane serine protease 3).

Ensembl:

ensembl_id ENSDARG00000036545

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001024 True 980 mRNA 0.49 7 46948010 46957351

Neighbor

gene id symbol gene type direction distance location
XLOC_000593 CU986305.1 coding upstream 102334 46827891 ~ 46845676 (+)
XLOC_000592 NA coding upstream 211894 46735728 ~ 46736116 (+)
XLOC_000591 NA coding upstream 221053 46719096 ~ 46726957 (+)
XLOC_000590 arl11 coding upstream 293482 46652615 ~ 46654528 (+)
XLOC_000589 cab39l coding upstream 330727 46598502 ~ 46617283 (+)
XLOC_000595 NA coding downstream 2551 46959902 ~ 46964228 (+)
XLOC_000596 cryzl1 coding downstream 132150 47089501 ~ 47105214 (+)
XLOC_000597 NA coding downstream 195839 47153190 ~ 47155997 (+)
XLOC_000598 cbr1 coding downstream 208491 47165842 ~ 47173403 (+)
XLOC_000599 morc3b coding downstream 221178 47178529 ~ 47202163 (+)
XLOC_000586 BX465849.1 non-coding upstream 546374 46400612 ~ 46401636 (+)
XLOC_000585 NA non-coding upstream 640460 46307015 ~ 46307550 (+)
XLOC_000602 NA non-coding downstream 496242 47453593 ~ 47459506 (+)
XLOC_000608 CR381623.1 non-coding downstream 939918 47897269 ~ 47897385 (+)
XLOC_000609 CR381623.2 non-coding downstream 956744 47914095 ~ 47914209 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000119_01567450_01592488 NA coding CI01000119 null 1566945 ~ 1592488 (-)